Rosetta Protocols  2014.35
Namespaces | Macros | Typedefs | Functions | Variables
FunGroupTK.cc File Reference

??? More...

#include <protocols/kinmatch/FunGroupTK.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/kinematics/Stub.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <numeric/constants.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/scoring/ImplicitFastClashCheck.hh>
#include <sstream>
#include <utility/vector1.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/AtomTree.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::kinmatch
 

Macros

#define CYS_CB_HG_DIS   2.911171
 
#define CYS_SG_CB_H   0.7494478
 
#define CYS_HG_SG_PRJLEN   2.088496
 
#define CYS_1oSIN_CB_SG_HG   1.092026
 
#define CYS_HG_SG_X_DROP   0.0998
 
#define CYS_CB_SG_PERP   1.646237
 
#define HIS_CB_HG_DIS   5.6570235
 
#define HIS_CB_HG_PAR   3.946279
 
#define HIS_CG_CB_H   0.6019999
 
#define HIS_HE2_CG_PRJLEN   1.5392682574
 
#define HIS_1oSIN_CA_CB_CG   1.092026358
 
#define HIS_HE2_CG_X_DROP   (2.4821480185 - 0.087)
 
#define HIS_CB_CG_PERP   1.371000
 
#define HIS_CB_HG_DIS   5.6570235
 
#define HIS_CB_HG_PAR   3.946279
 
#define HIS_CG_CB_H   0.6019999
 
#define HIS_HE2_CG_PRJLEN   1.5392682574
 
#define HIS_1oSIN_CA_CB_CG   1.092026358
 
#define HIS_HE2_CG_X_DROP   (2.4821480185 - 0.087)
 
#define HIS_CB_CG_PERP   1.371000
 

Typedefs

typedef utility::vector1
< core::Real
protocols::kinmatch::Reals
 
typedef utility::vector1
< core::Size
protocols::kinmatch::Sizes
 
typedef numeric::xyzVector< Realprotocols::kinmatch::Vec
 
typedef numeric::xyzMatrix< Realprotocols::kinmatch::Mat
 
typedef utility::vector1< Vecprotocols::kinmatch::Vecs
 

Functions

template<typename T >
std::string protocols::kinmatch::str (T const &t)
 
template<typename T >
std::string protocols::kinmatch::lzs (T const &t, int const w)
 
Real protocols::kinmatch::sqr (Real const r)
 
Vec protocols::kinmatch::xyz (Pose const &p, Size const &ia, Size const &ir)
 
PoseOP protocols::kinmatch::alapose (Pose const &pose_in)
 
vector1< Sizeprotocols::kinmatch::allifnone (vector1< Size > v, Size n)
 
void protocols::kinmatch::dumpcgo (Vec v, string l)
 
void protocols::kinmatch::xform_rsd_gl2 (Stub const &s, Residue &rsd)
 

Variables

static basic::Tracer TR ("protocols.kinmatchFunGroupTK")
 

Detailed Description

???

Macro Definition Documentation

#define CYS_1oSIN_CB_SG_HG   1.092026
#define CYS_CB_HG_DIS   2.911171
#define CYS_CB_SG_PERP   1.646237
#define CYS_HG_SG_PRJLEN   2.088496
#define CYS_HG_SG_X_DROP   0.0998
#define CYS_SG_CB_H   0.7494478
#define HIS_1oSIN_CA_CB_CG   1.092026358
#define HIS_1oSIN_CA_CB_CG   1.092026358
#define HIS_CB_CG_PERP   1.371000
#define HIS_CB_CG_PERP   1.371000
#define HIS_CB_HG_DIS   5.6570235
#define HIS_CB_HG_DIS   5.6570235
#define HIS_CB_HG_PAR   3.946279
#define HIS_CB_HG_PAR   3.946279
#define HIS_CG_CB_H   0.6019999
#define HIS_CG_CB_H   0.6019999
#define HIS_HE2_CG_PRJLEN   1.5392682574
#define HIS_HE2_CG_PRJLEN   1.5392682574
#define HIS_HE2_CG_X_DROP   (2.4821480185 - 0.087)
#define HIS_HE2_CG_X_DROP   (2.4821480185 - 0.087)

Variable Documentation

basic::Tracer TR("protocols.kinmatchFunGroupTK")
static