| add_external_loop_rotamer(StepWiseSamplerSizedOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| add_internal_loop_rotamer(StepWiseSamplerSizedOP const &rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| add_residue_alternative_rotamer(ResidueAlternativeStepWiseSamplerOP const &rotamer) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| apply(core::pose::Pose &pose) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| apply(core::pose::Pose &pose, Size const id) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_rotamer() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| fast_forward(Size const sampler_number) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| protocols::stepwise::sampler::StepWiseSamplerSized::fast_forward() | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| fast_forward_to_next_residue(Size const i) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| fast_forward_to_next_residue_pair(Size const i, Size const j) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| Filters_map typedef | protocols::moves::Mover | |
| find_resnum(Size const seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_residue_at_origin(Size const seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| get_residue_at_origin_with_matching_type(Size const seqpos, core::conformation::Residue const &rsd_in) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| get_type() const | protocols::moves::Mover | inline |
| has_resnum(Size const seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| id() const | protocols::stepwise::sampler::StepWiseSamplerSized | inline |
| id2list(core::Size const id) const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| id_ | protocols::stepwise::sampler::StepWiseSamplerSized | protected |
| id_for_resnum(Size const seqpos) | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| id_list_ | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| is_init() const | protocols::stepwise::sampler::StepWiseSamplerBase | inlineprotected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| list2id(utility::vector1< core::Size > const &id_list) const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| not_end() const | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| operator++() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| random() const | protocols::stepwise::sampler::StepWiseSamplerBase | inlinevirtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| reset_status() | protocols::moves::Mover | |
| residue_alternative_rotamer_list_ | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | private |
| residue_alternative_rotamer_map_ | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | private |
| ResidueAlternativeStepWiseSamplerComb() | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| rotamer_list_ | protocols::stepwise::sampler::StepWiseSamplerSizedComb | protected |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_and_reinit(T ¶ms, T const &setting) | protocols::stepwise::sampler::StepWiseSamplerBase | inlineprotected |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_id(Size const setting) | protocols::stepwise::sampler::StepWiseSamplerSized | inlinevirtual |
| set_init(bool const setting) | protocols::stepwise::sampler::StepWiseSamplerBase | inlineprotected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random(bool const setting) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &out, Size const indent=0) const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
| protocols::moves::Mover::show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| size() const | protocols::stepwise::sampler::StepWiseSamplerSizedComb | inlinevirtual |
| StepWiseSamplerBase() | protocols::stepwise::sampler::StepWiseSamplerBase | inline |
| StepWiseSamplerSized() | protocols::stepwise::sampler::StepWiseSamplerSized | |
| StepWiseSamplerSizedComb() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| StepWiseSamplerSizedComb(StepWiseSamplerSizedOP outer_loop_rotamer, StepWiseSamplerSizedOP inner_loop_rotamer) | protocols::stepwise::sampler::StepWiseSamplerSizedComb | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| TorsionList typedef | protocols::stepwise::sampler::StepWiseSamplerBase | |
| type() const | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | inlinevirtual |
| protocols::moves::Mover::type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ResidueAlternativeStepWiseSamplerComb() | protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb | |
| ~StepWiseSamplerBase() | protocols::stepwise::sampler::StepWiseSamplerBase | inlinevirtual |
| ~StepWiseSamplerSized() | protocols::stepwise::sampler::StepWiseSamplerSized | virtual |
| ~StepWiseSamplerSizedComb() | protocols::stepwise::sampler::StepWiseSamplerSizedComb | virtual |
1.8.7