protocols::dna::DnaChains Class Reference

#include <DnaChains.hh>

Public Member Functions
	DnaChains ()
virtual	~DnaChains ()
	DnaChains (DnaChains const &other)
DnaChainsOP	clone () const
void	clear ()
bool	empty () const
core::Size	size () const
DnaPosition &	operator[] (core::Size resindex)
DnaPosition const &	operator[] (core::Size resindex) const
DnaPositions &	positions ()
DnaPositions const &	positions () const
DnaPositions::iterator	begin ()
DnaPositions::iterator	end ()
DnaPositions::const_iterator	begin () const
DnaPositions::const_iterator	end () const
bool	is_top (core::Size index) const
bool	contains (core::Size index) const
void	print (core::pose::Pose const &pose, std::ostream &os) const

Private Attributes
DnaPositions	positions_

Constructor & Destructor Documentation

protocols::dna::DnaChains::DnaChains

(

)

Referenced by clone().

protocols::dna::DnaChains::~DnaChains ( )

virtual

protocols::dna::DnaChains::DnaChains

(

DnaChains const &

other

)

References positions(), and positions_.

Member Function Documentation

DnaPositions::iterator protocols::dna::DnaChains::begin ( )

inline

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

DnaPositions::const_iterator protocols::dna::DnaChains::begin ( ) const

inline

References positions_.

void protocols::dna::DnaChains::clear ( )

inline

References positions_.

Referenced by protocols::dna::find_basepairs().

DnaChainsOP protocols::dna::DnaChains::clone

(

)

const

References DnaChains().

bool protocols::dna::DnaChains::contains

(

core::Size

index

)

const

References is_top(), positions_, and runtime_assert.

Referenced by protocols::dna::find_basepairs().

bool protocols::dna::DnaChains::empty ( ) const

inline

References positions_.

Referenced by protocols::dna::find_basepairs().

DnaPositions::iterator protocols::dna::DnaChains::end ( )

inline

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

DnaPositions::const_iterator protocols::dna::DnaChains::end ( ) const

inline

References positions_.

bool protocols::dna::DnaChains::is_top ( core::Size  index ) const

inline

References positions_.

Referenced by protocols::motifs::MotifDnaPacker::apply(), and contains().

DnaPosition& protocols::dna::DnaChains::operator[] ( core::Size  resindex )

inline

References positions_.

DnaPosition const& protocols::dna::DnaChains::operator[] ( core::Size  resindex ) const

inline

References positions_.

DnaPositions& protocols::dna::DnaChains::positions ( )

inline

References positions_.

Referenced by DnaChains().

DnaPositions const& protocols::dna::DnaChains::positions ( ) const

inline

References positions_.

void protocols::dna::DnaChains::print	(	core::pose::Pose const &	pose,
		std::ostream &	os
	)		const

References protocols::dna::DnaPosition::bottom(), I, core::chemical::ResidueType::name3(), protocols::dna::DnaPosition::paired(), core::pose::Pose::pdb_info(), positions_, core::pose::Pose::residue_type(), runtime_assert, and protocols::dna::DnaPosition::top().

Referenced by protocols::dna::find_basepairs().

core::Size protocols::dna::DnaChains::size ( ) const

inline

References positions_.

Member Data Documentation

DnaPositions protocols::dna::DnaChains::positions_

private

Referenced by begin(), clear(), contains(), DnaChains(), empty(), end(), is_top(), operator[](), positions(), print(), and size().

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The documentation for this class was generated from the following files:

• src/protocols/dna/DnaChains.hh
• src/protocols/dna/DnaChains.cc