Rosetta Protocols  2014.35
Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::features::ScoreTypeFeatures Class Reference

#include <ScoreTypeFeatures.hh>

Public Member Functions

 ScoreTypeFeatures ()
 
 ScoreTypeFeatures (core::scoring::ScoreFunctionOP scfxn)
 
 ScoreTypeFeatures (ScoreTypeFeatures const &src)
 
virtual ~ScoreTypeFeatures ()
 
std::string type_name () const
 return string with class name More...
 
virtual void write_schema_to_db (utility::sql_database::sessionOP db_session) const
 generate the table schemas and write them to the database More...
 
utility::vector1< std::stringfeatures_reporter_dependencies () const
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
core::Size report_features (core::pose::Pose const &, utility::vector1< bool > const &, StructureID struct_id, utility::sql_database::sessionOP db_session)
 collect all the feature data for the pose. More...
 
core::Size report_features (core::Size const batch_id, utility::sql_database::sessionOP db_session)
 
void delete_record (StructureID struct_id, utility::sql_database::sessionOP db_session)
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
 FeaturesReporter ()
 
virtual ~FeaturesReporter ()
 Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
virtual void load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)
 
void set_relevant_residues_mode (RelevantResiduesMode::T setting)
 
RelevantResiduesMode::T get_relevant_residues_mode () const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const
 

Private Member Functions

void insert_score_type_rows (core::Size protocol_id, utility::sql_database::sessionOP db_session)
 

Private Attributes

core::scoring::ScoreFunctionOP scfxn_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 
- Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T relevant_residues_mode_
 

Constructor & Destructor Documentation

protocols::features::ScoreTypeFeatures::ScoreTypeFeatures ( )

References get_score_function().

protocols::features::ScoreTypeFeatures::ScoreTypeFeatures ( core::scoring::ScoreFunctionOP  scfxn)
protocols::features::ScoreTypeFeatures::ScoreTypeFeatures ( ScoreTypeFeatures const &  src)
protocols::features::ScoreTypeFeatures::~ScoreTypeFeatures ( )
virtual

Member Function Documentation

void protocols::features::ScoreTypeFeatures::delete_record ( StructureID  struct_id,
utility::sql_database::sessionOP  db_session 
)
virtual
utility::vector1< std::string > protocols::features::ScoreTypeFeatures::features_reporter_dependencies ( ) const
virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::ScoreTypeFeatures::insert_score_type_rows ( core::Size  protocol_id,
utility::sql_database::sessionOP  db_session 
)
private
core::Size protocols::features::ScoreTypeFeatures::report_features ( core::pose::Pose const &  ,
utility::vector1< bool > const &  ,
StructureID  ,
utility::sql_database::sessionOP   
)
virtual

collect all the feature data for the pose.

Implements protocols::features::FeaturesReporter.

core::Size protocols::features::ScoreTypeFeatures::report_features ( core::Size const  batch_id,
utility::sql_database::sessionOP  db_session 
)
string protocols::features::ScoreTypeFeatures::type_name ( ) const
virtual

return string with class name

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::ScoreTypeFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
virtual

Member Data Documentation

core::scoring::ScoreFunctionOP protocols::features::ScoreTypeFeatures::scfxn_
private

Referenced by ScoreTypeFeatures().


The documentation for this class was generated from the following files: