Rosetta Protocols  2014.35
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::match::output::SameSequenceGrouper Class Reference

Class to group matches that represent the same amino acids at the same launch points. E.g. Two matches that both put a cys at launch point #33, a ser a launch point #42 and another ser at launch point #80 would be grouped together – even if they are different rotamers. More...

#include <SameSequenceGrouper.hh>

Public Types

typedef core::Real Real
 
typedef core::Size Size
 
typedef std::map
< utility::OrderedTuple
< utility::vector1< Size >
>, Size
SequenceMap
 
- Public Types inherited from protocols::match::output::MatchGrouper
typedef core::Real Real
 

Public Member Functions

 SameSequenceGrouper ()
 
 SameSequenceGrouper (Size ncst)
 
virtual ~SameSequenceGrouper ()
 
virtual Size assign_group_for_match (match const &m)
 
virtual Size assign_group_for_match (match_dspos1 const &m)
 
virtual void reset ()
 
virtual void set_n_geometric_constraints (Size n_csts)
 
void set_hit_cacher (UpstreamHitCacherOP cacher)
 
- Public Member Functions inherited from protocols::match::output::MatchGrouper
 MatchGrouper ()
 
virtual ~MatchGrouper ()
 

Private Attributes

Size n_geometric_constraints_
 
UpstreamHitCacherOP hit_cacher_
 
SequenceMap sequence_indexer_
 

Detailed Description

Class to group matches that represent the same amino acids at the same launch points. E.g. Two matches that both put a cys at launch point #33, a ser a launch point #42 and another ser at launch point #80 would be grouped together – even if they are different rotamers.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::match::output::SameSequenceGrouper::SameSequenceGrouper ( )
protocols::match::output::SameSequenceGrouper::SameSequenceGrouper ( Size  ncst)
protocols::match::output::SameSequenceGrouper::~SameSequenceGrouper ( )
virtual

Member Function Documentation

SameSequenceGrouper::Size protocols::match::output::SameSequenceGrouper::assign_group_for_match ( match const &  m)
virtual
SameSequenceGrouper::Size protocols::match::output::SameSequenceGrouper::assign_group_for_match ( match_dspos1 const &  m)
virtual
void protocols::match::output::SameSequenceGrouper::reset ( void  )
virtual
void protocols::match::output::SameSequenceGrouper::set_hit_cacher ( UpstreamHitCacherOP  cacher)

References hit_cacher_.

void protocols::match::output::SameSequenceGrouper::set_n_geometric_constraints ( Size  n_csts)
virtual

Member Data Documentation

UpstreamHitCacherOP protocols::match::output::SameSequenceGrouper::hit_cacher_
private
Size protocols::match::output::SameSequenceGrouper::n_geometric_constraints_
private
SequenceMap protocols::match::output::SameSequenceGrouper::sequence_indexer_
private

Referenced by assign_group_for_match(), and reset().


The documentation for this class was generated from the following files: