protocols::jumping::MembraneJump Class Reference

#include <MembraneJump.hh>

Public Member Functions
virtual	~MembraneJump ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	MembraneJump ()
void	init (std::string const &template_file, std::string const &pairings_file)
bool	defined () const
Size	template_size () const
Size	pairings_size () const
void	setup_fold_tree (core::pose::Pose &pose, core::Size njumps)
void	rt_templates (core::pose::Pose &pose)

Private Attributes
PairingLibrary	templates_
core::scoring::dssp::PairingList	pairings_
core::Size	template_size_
core::Size	pairings_size_
core::scoring::dssp::PairingList	selected_pairings_

Constructor & Destructor Documentation

protocols::jumping::MembraneJump::~MembraneJump ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

protocols::jumping::MembraneJump::MembraneJump

(

)

Member Function Documentation

bool protocols::jumping::MembraneJump::defined ( ) const

inline

References pairings_size_, and template_size_.

void protocols::jumping::MembraneJump::init	(	std::string const &	template_file,
		std::string const &	pairings_file
	)

References protocols::jumping::read_pairing_list().

Size protocols::jumping::MembraneJump::pairings_size ( ) const

inline

References pairings_size_.

void protocols::jumping::MembraneJump::rt_templates

(

core::pose::Pose &

pose

)

References core::pose::add_variant_type_to_pose_residue(), core::pose::Pose::conformation(), core::pose::Pose::fold_tree(), core::pose::named_stub_id_to_stub_id(), and core::conformation::Conformation::set_stub_transform().

void protocols::jumping::MembraneJump::setup_fold_tree	(	core::pose::Pose &	pose,
		core::Size	njumps
	)

References core::pose::Pose::data(), core::pose::Pose::fold_tree(), basic::datacache::BasicDataCache::get_const_ptr(), jumps, core::pose::datacache::CacheableDataType::MEMBRANE_TOPOLOGY, nres, core::kinematics::FoldTree::put_jump_stubs_intra_residue(), core::kinematics::FoldTree::random_tree_from_jump_points(), protocols::jumping::RG, core::scoring::MembraneTopology::span_begin(), core::scoring::MembraneTopology::span_end(), core::scoring::MembraneTopology::tmhelix(), core::pose::Pose::total_residue(), protocols::jumping::tr, and numeric::random::RandomGenerator::uniform().

Size protocols::jumping::MembraneJump::template_size ( ) const

inline

References template_size_.

Member Data Documentation

core::scoring::dssp::PairingList protocols::jumping::MembraneJump::pairings_

private

core::Size protocols::jumping::MembraneJump::pairings_size_

private

Referenced by defined(), and pairings_size().

core::scoring::dssp::PairingList protocols::jumping::MembraneJump::selected_pairings_

private

core::Size protocols::jumping::MembraneJump::template_size_

private

Referenced by defined(), and template_size().

PairingLibrary protocols::jumping::MembraneJump::templates_

private

---

The documentation for this class was generated from the following files:

• src/protocols/jumping/MembraneJump.hh
• src/protocols/jumping/MembraneJump.cc