Rosetta Protocols  2014.35
Public Member Functions | List of all members
protocols::frag_picker::scores::MakePhiPsiSquareWell Class Reference

Matker class that produces a new PhiPsiSquareWell object. More...

#include <PhiPsiSquareWell.hh>

Public Member Functions

 MakePhiPsiSquareWell ()
FragmentScoringMethodOP make (Size, Real, bool, FragmentPickerOP, std::string)
 Creates a PhiPsiSquareWell scoring method. More...
- Public Member Functions inherited from protocols::frag_picker::scores::MakeFragmentScoringMethod
 MakeFragmentScoringMethod (std::string name)
std::stringget_score_name ()

Detailed Description

Matker class that produces a new PhiPsiSquareWell object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MakePhiPsiSquareWell::MakePhiPsiSquareWell ( )

Member Function Documentation

FragmentScoringMethodOP protocols::frag_picker::scores::MakePhiPsiSquareWell::make ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
FragmentPickerOP  ,
std::string  input_file 

Creates a PhiPsiSquareWell scoring method.

priority- priority of the scoring method. The higher value the earlier the score will be evaluated
lowest_acceptable_value- if a calculated score is higher than this value, fragment will be neglected
FragmentPickerOPobject - not used
extras- additional parameters to create a new object. Allowed values are:
  • empty: then the maker tries to create a scoring object from a TALOS file trying in::file::talos_phi_psi flag. If fails, will try to use a pose from in::file::s
  • a pdb file, pdb extension is necessary. This will create a pose && steal Phi && Psi
  • a TALOS file with Phi/Psi prediction (tab extension is necessary)

Implements protocols::frag_picker::scores::MakeFragmentScoringMethod.

References in, in::file::native, option, core::import_pose::pose_from_pdb(), in::file::s, core::pose::Pose::sequence(), in::file::talos_phi_psi, protocols::frag_picker::scores::tr, user, utility_exit_with_message, and protocols::frag_picker::PhiPsiTalosIO::write().

The documentation for this class was generated from the following files: