protocols::frag_picker::scores::MakePhiPsiSquareWell Class Reference

Matker class that produces a new PhiPsiSquareWell object. More...

#include <PhiPsiSquareWell.hh>

Public Member Functions
	MakePhiPsiSquareWell ()
FragmentScoringMethodOP	make (Size, Real, bool, FragmentPickerOP, std::string)
	Creates a PhiPsiSquareWell scoring method. More...
Public Member Functions inherited from protocols::frag_picker::scores::MakeFragmentScoringMethod
	MakeFragmentScoringMethod (std::string name)
std::string &	get_score_name ()

Detailed Description

Matker class that produces a new PhiPsiSquareWell object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MakePhiPsiSquareWell::MakePhiPsiSquareWell ( )

inline

Member Function Documentation

FragmentScoringMethodOP protocols::frag_picker::scores::MakePhiPsiSquareWell::make ( Size  priority, Real  lowest_acceptable_value, bool  use_lowest, FragmentPickerOP  , std::string  input_file  )

virtual

Creates a PhiPsiSquareWell scoring method.

Parameters

priority	- priority of the scoring method. The higher value the earlier the score will be evaluated
lowest_acceptable_value	- if a calculated score is higher than this value, fragment will be neglected
FragmentPickerOP	object - not used
extras	- additional parameters to create a new object. Allowed values are: empty: then the maker tries to create a scoring object from a TALOS file trying in::file::talos_phi_psi flag. If fails, will try to use a pose from in::file::s a pdb file, pdb extension is necessary. This will create a pose && steal Phi && Psi a TALOS file with Phi/Psi prediction (tab extension is necessary)

Implements protocols::frag_picker::scores::MakeFragmentScoringMethod.

References in, in::file::native, option, core::import_pose::pose_from_pdb(), in::file::s, core::pose::Pose::sequence(), in::file::talos_phi_psi, protocols::frag_picker::scores::tr, user, utility_exit_with_message, and protocols::frag_picker::PhiPsiTalosIO::write().

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/PhiPsiSquareWell.hh
• src/protocols/frag_picker/scores/PhiPsiSquareWell.cc