Rosetta Protocols  2014.35
Namespaces | Functions | Variables
FragmentChunkCrms.cc File Reference
#include <protocols/frag_picker/scores/FragmentChunkCrms.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/conformation/Residue.hh>
#include <basic/Tracer.hh>
#include <numeric/model_quality/rms.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <basic/prof.hh>
#include <core/id/NamedAtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/pose/Pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <utility/io/izstream.hh>
#include <iostream>
#include <string>
#include <basic/database/open.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/NWAligner.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/MatrixScoringScheme.hh>
#include <core/sequence/SimpleScoringScheme.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 
 protocols::frag_picker::scores
 

Functions

void protocols::frag_picker::scores::sequencealign (core::sequence::SequenceOP seq1, core::sequence::SequenceOP seq2, FArray1D_int &seqmapping)
 

Variables

static basic::Tracer protocols::frag_picker::scores::trTmScore ("protocols.frag_picker.scores.FragmentChunkCrms")