Rosetta Protocols  2014.35
protocols::farna::RNA_Fragments Member List

This is the complete list of members for protocols::farna::RNA_Fragments, including all inherited members.

apply_random_fragment(core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, toolbox::AllowInsertOP allow_insert)protocols::farna::RNA_Fragmentsvirtual
compare_RNA_char(char const char1, char const char2)protocols::farna::RNA_Fragmentsprivate
compare_RNA_secstruct(char const char1, char const char2)protocols::farna::RNA_Fragmentsprivate
convert_based_on_match_type(std::string const RNA_string, core::Size const type)protocols::farna::RNA_Fragmentsprivate
fragment_library_pointer_mapprotocols::farna::RNA_Fragmentsprivate
is_fullatom()protocols::farna::RNA_Fragmentsvirtual
name(core::Size const &i) const protocols::farna::RNA_Fragmentsinline
non_main_chain_sugar_coords(core::Size const &i, core::Size const &j, core::Size const &k) const protocols::farna::RNA_Fragmentsinline
non_main_chain_sugar_coords_defined() const protocols::farna::RNA_Fragmentsinline
pick_fragment_library(SequenceSecStructPair const &key)protocols::farna::RNA_Fragmentsprivate
pick_random_fragment(TorsionSet &torsion_set, core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type=MATCH_YR)protocols::farna::RNA_Fragments
pick_random_fragment(TorsionSet &torsion_set, std::string const RNA_string, std::string const RNA_secstruct_string, core::Size const type=MATCH_YR)protocols::farna::RNA_Fragmentsprivate
pick_random_fragment(FArray1D< core::Real > &RNA_torsions, std::string const RNA_string)protocols::farna::RNA_Fragmentsprivate
read_vall_torsions(std::string const filename)protocols::farna::RNA_Fragments
RNA_Fragments()protocols::farna::RNA_Fragments
RNA_Fragments(std::string const filename)protocols::farna::RNA_Fragmentsinline
secstruct(core::Size const &i) const protocols::farna::RNA_Fragmentsinline
torsions(core::Size const &i, core::Size const &j) const protocols::farna::RNA_Fragmentsinline
vall_edge_is_base_pairing_protocols::farna::RNA_Fragmentsprivate
vall_is_chainbreak_protocols::farna::RNA_Fragmentsprivate
vall_makes_canonical_base_pair_protocols::farna::RNA_Fragmentsprivate
vall_name_protocols::farna::RNA_Fragmentsprivate
vall_non_main_chain_sugar_coords_protocols::farna::RNA_Fragmentsprivate
vall_non_main_chain_sugar_coords_defined_protocols::farna::RNA_Fragmentsprivate
vall_secstruct_protocols::farna::RNA_Fragmentsprivate
vall_sequence_protocols::farna::RNA_Fragmentsprivate
vall_size_protocols::farna::RNA_Fragmentsprivate
vall_torsions_protocols::farna::RNA_Fragmentsprivate
~RNA_Fragments()protocols::farna::RNA_Fragmentsvirtual