Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::NMerSVMEnergyFilter Class Reference

#include <NMerSVMEnergyFilter.hh>

Public Member Functions

 NMerSVMEnergyFilter ()
 
 NMerSVMEnergyFilter (core::Real const score_type_threshold, std::string string_resnums)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~NMerSVMEnergyFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Real score_type_threshold_
 
bool dump_table_
 
std::string string_resnums_
 
core::scoring::methods::NMerSVMEnergy energy_method_
 
bool count_eps_
 
core::Real ep_cutoff_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter ( core::Real const  score_type_threshold,
std::string  string_resnums 
)
protocols::simple_filters::NMerSVMEnergyFilter::~NMerSVMEnergyFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::NMerSVMEnergyFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), score_type_threshold_, and protocols::simple_filters::TR.

filters::FilterOP protocols::simple_filters::NMerSVMEnergyFilter::clone ( ) const
inlinevirtual
core::Real protocols::simple_filters::NMerSVMEnergyFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::NMerSVMEnergyFilter::fresh_instance ( ) const
inlinevirtual
void protocols::simple_filters::NMerSVMEnergyFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap ,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::simple_filters::NMerSVMEnergyFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::simple_filters::NMerSVMEnergyFilter::count_eps_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::NMerSVMEnergyFilter::dump_table_
private

Referenced by compute(), and parse_my_tag().

core::scoring::methods::NMerSVMEnergy protocols::simple_filters::NMerSVMEnergyFilter::energy_method_
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::ep_cutoff_
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::score_type_threshold_
private
std::string protocols::simple_filters::NMerSVMEnergyFilter::string_resnums_
private

The documentation for this class was generated from the following files: