protocols::farna::RNA_Minimizer Member List

This is the complete list of members for protocols::farna::RNA_Minimizer, including all inherited members.

allow_insert_	protocols::farna::RNA_Minimizer	private
apply(core::pose::Pose &pose)	protocols::farna::RNA_Minimizer	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::farna::RNA_Minimizer	inlinevirtual
clone_scorefxn() const	protocols::farna::RNA_Minimizer	inline
close_loops_	protocols::farna::RNA_Minimizer	private
coord_cst_weight_	protocols::farna::RNA_Minimizer	private
coord_sdev_	protocols::farna::RNA_Minimizer	private
create()	protocols::moves::Mover	virtual
deriv_check(bool const setting)	protocols::farna::RNA_Minimizer	inline
deriv_check_	protocols::farna::RNA_Minimizer	private
do_dump_pdb_	protocols::farna::RNA_Minimizer	private
extra_minimize_chi_res_	protocols::farna::RNA_Minimizer	private
extra_minimize_res_	protocols::farna::RNA_Minimizer	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::farna::RNA_Minimizer	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
include_default_linear_chainbreak_	protocols::farna::RNA_Minimizer	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
min_type_	protocols::farna::RNA_Minimizer	private
move_first_rigid_body_	protocols::farna::RNA_Minimizer	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
o2prime_trials(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP const &scorefxn) const	protocols::farna::RNA_Minimizer	private
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
perform_minimizer_run_	protocols::farna::RNA_Minimizer	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
RNA_Minimizer()	protocols::farna::RNA_Minimizer
rounds_	protocols::farna::RNA_Minimizer	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
score_function() const	protocols::farna::RNA_Minimizer	inline
scorefxn_	protocols::farna::RNA_Minimizer	private
set_allow_insert(toolbox::AllowInsertOP allow_insert)	protocols::farna::RNA_Minimizer
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_do_dump_pdb(bool const setting)	protocols::farna::RNA_Minimizer	inline
set_extra_minimize_chi_res(utility::vector1< core::Size > setting)	protocols::farna::RNA_Minimizer
set_extra_minimize_res(utility::vector1< core::Size > setting)	protocols::farna::RNA_Minimizer
set_include_default_linear_chainbreak(bool const setting)	protocols::farna::RNA_Minimizer	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_min_type(std::string const setting)	protocols::farna::RNA_Minimizer	inline
set_move_first_rigid_body(bool const setting)	protocols::farna::RNA_Minimizer	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_perform_minimizer_run(bool const setting)	protocols::farna::RNA_Minimizer	inline
set_score_function(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::farna::RNA_Minimizer
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_verbose(bool const setting)	protocols::farna::RNA_Minimizer	inline
setup_movemap(core::kinematics::MoveMap &mm, core::pose::Pose &pose)	protocols::farna::RNA_Minimizer	private
show(std::ostream &output=std::cout) const	protocols::farna::RNA_Minimizer	virtual
skip_o2prime_trials(bool const setting)	protocols::farna::RNA_Minimizer	inline
skip_o2prime_trials_	protocols::farna::RNA_Minimizer	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
update_allow_insert_with_extra_minimize_res(core::pose::Pose const &pose)	protocols::farna::RNA_Minimizer	private
use_coordinate_constraints(bool const setting)	protocols::farna::RNA_Minimizer	inline
use_coordinate_constraints_	protocols::farna::RNA_Minimizer	private
vary_bond_geometry(bool const setting)	protocols::farna::RNA_Minimizer	inline
vary_bond_geometry_	protocols::farna::RNA_Minimizer	private
verbose_	protocols::farna::RNA_Minimizer	private
~Mover()	protocols::moves::Mover	virtual