Rosetta Protocols  2014.35
protocols::farna::RNA_Minimizer Member List

This is the complete list of members for protocols::farna::RNA_Minimizer, including all inherited members.

allow_insert_protocols::farna::RNA_Minimizerprivate
apply(core::pose::Pose &pose)protocols::farna::RNA_Minimizervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::farna::RNA_Minimizerinlinevirtual
clone_scorefxn() const protocols::farna::RNA_Minimizerinline
close_loops_protocols::farna::RNA_Minimizerprivate
coord_cst_weight_protocols::farna::RNA_Minimizerprivate
coord_sdev_protocols::farna::RNA_Minimizerprivate
create()protocols::moves::Movervirtual
deriv_check(bool const setting)protocols::farna::RNA_Minimizerinline
deriv_check_protocols::farna::RNA_Minimizerprivate
do_dump_pdb_protocols::farna::RNA_Minimizerprivate
extra_minimize_chi_res_protocols::farna::RNA_Minimizerprivate
extra_minimize_res_protocols::farna::RNA_Minimizerprivate
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::farna::RNA_Minimizervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
include_default_linear_chainbreak_protocols::farna::RNA_Minimizerprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
min_type_protocols::farna::RNA_Minimizerprivate
move_first_rigid_body_protocols::farna::RNA_Minimizerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
o2prime_trials(core::pose::Pose &pose, core::scoring::ScoreFunctionCOP const &scorefxn) const protocols::farna::RNA_Minimizerprivate
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
perform_minimizer_run_protocols::farna::RNA_Minimizerprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
RNA_Minimizer()protocols::farna::RNA_Minimizer
rounds_protocols::farna::RNA_Minimizerprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
score_function() const protocols::farna::RNA_Minimizerinline
scorefxn_protocols::farna::RNA_Minimizerprivate
set_allow_insert(toolbox::AllowInsertOP allow_insert)protocols::farna::RNA_Minimizer
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_do_dump_pdb(bool const setting)protocols::farna::RNA_Minimizerinline
set_extra_minimize_chi_res(utility::vector1< core::Size > setting)protocols::farna::RNA_Minimizer
set_extra_minimize_res(utility::vector1< core::Size > setting)protocols::farna::RNA_Minimizer
set_include_default_linear_chainbreak(bool const setting)protocols::farna::RNA_Minimizerinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_min_type(std::string const setting)protocols::farna::RNA_Minimizerinline
set_move_first_rigid_body(bool const setting)protocols::farna::RNA_Minimizerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_perform_minimizer_run(bool const setting)protocols::farna::RNA_Minimizerinline
set_score_function(core::scoring::ScoreFunctionOP const &scorefxn)protocols::farna::RNA_Minimizer
set_type(std::string const &setting)protocols::moves::Moverinline
set_verbose(bool const setting)protocols::farna::RNA_Minimizerinline
setup_movemap(core::kinematics::MoveMap &mm, core::pose::Pose &pose)protocols::farna::RNA_Minimizerprivate
show(std::ostream &output=std::cout) const protocols::farna::RNA_Minimizervirtual
skip_o2prime_trials(bool const setting)protocols::farna::RNA_Minimizerinline
skip_o2prime_trials_protocols::farna::RNA_Minimizerprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
update_allow_insert_with_extra_minimize_res(core::pose::Pose const &pose)protocols::farna::RNA_Minimizerprivate
use_coordinate_constraints(bool const setting)protocols::farna::RNA_Minimizerinline
use_coordinate_constraints_protocols::farna::RNA_Minimizerprivate
vary_bond_geometry(bool const setting)protocols::farna::RNA_Minimizerinline
vary_bond_geometry_protocols::farna::RNA_Minimizerprivate
verbose_protocols::farna::RNA_Minimizerprivate
~Mover()protocols::moves::Movervirtual