Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::docking::DockingLowResFilter Class Reference

Low-resolution (centroid-mode) filter for docking. Checks (1) at least some contact is being made between docking partners, (2) clashes are limited so partners are not overlapping and (3) constraints, if present, are met. More...

#include <DockFilters.hh>

Public Member Functions

 DockingLowResFilter ()
 
 DockingLowResFilter (const DockingLowResFilter &init)
 
 ~DockingLowResFilter ()
 
void set_use_constraints (bool flag, core::Real cutoff=1.0)
 
bool apply (core::pose::Pose const &pose) const
 add docking constraints More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
protocols::filters::FilterOP clone () const
 
protocols::filters::FilterOP fresh_instance () const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &, Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

bool use_constraints_
 
core::Real constraint_cutoff_
 boolean to indicate if constraints are used More...
 
protocols::filters::FilterCollectionOP filters_
 cutoff value for the constraint score More...
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Detailed Description

Low-resolution (centroid-mode) filter for docking. Checks (1) at least some contact is being made between docking partners, (2) clashes are limited so partners are not overlapping and (3) constraints, if present, are met.

Constructor & Destructor Documentation

protocols::docking::DockingLowResFilter::DockingLowResFilter ( )
protocols::docking::DockingLowResFilter::DockingLowResFilter ( const DockingLowResFilter init)
protocols::docking::DockingLowResFilter::~DockingLowResFilter ( )

Member Function Documentation

bool protocols::docking::DockingLowResFilter::apply ( core::pose::Pose const &  pose) const
virtual

add docking constraints

Implements protocols::filters::Filter.

References protocols::filters::FilterCollection::apply(), and filters_.

protocols::filters::FilterOP protocols::docking::DockingLowResFilter::clone ( ) const
inlinevirtual
protocols::filters::FilterOP protocols::docking::DockingLowResFilter::fresh_instance ( ) const
inlinevirtual
void protocols::docking::DockingLowResFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual
void protocols::docking::DockingLowResFilter::set_use_constraints ( bool  flag,
core::Real  cutoff = 1.0 
)

Member Data Documentation

core::Real protocols::docking::DockingLowResFilter::constraint_cutoff_
private

boolean to indicate if constraints are used

protocols::filters::FilterCollectionOP protocols::docking::DockingLowResFilter::filters_
private

cutoff value for the constraint score

Referenced by apply(), DockingLowResFilter(), report(), and set_use_constraints().

bool protocols::docking::DockingLowResFilter::use_constraints_
private

Referenced by set_use_constraints().


The documentation for this class was generated from the following files: