#include <InterfacePackingFilter.hh>

Public Member Functions
	InterfacePackingFilter ()
	default ctor More...

virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual void	report (std::ostream &out, core::pose::Pose const &pose) const

virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual protocols::filters::FilterOP	clone () const

virtual protocols::filters::FilterOP	fresh_instance () const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~InterfacePackingFilter ()

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

core::Real	distance_cutoff () const

core::Real	contact_dist () const

core::Real	lower_threshold () const

core::Real	upper_threshold () const

bool	multicomp () const

std::string	sym_dof_names () const

void	distance_cutoff (core::Real const d)

void	contact_dist (core::Real const c)

void	lower_threshold (core::Real const l)

void	upper_threshold (core::Real const u)

void	sym_dof_names (std::string const s)

void	multicomp (bool const multicomp)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::Real	distance_cutoff_

core::Real	contact_dist_

core::Real	lower_threshold_

core::Real	upper_threshold_

bool	multicomp_

std::string	sym_dof_names_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::matdes::InterfacePackingFilter::parent

private

Constructor & Destructor Documentation

protocols::matdes::InterfacePackingFilter::InterfacePackingFilter ( )

default ctor

Referenced by clone(), protocols::matdes::InterfacePackingFilterCreator::create_filter(), and fresh_instance().

protocols::matdes::InterfacePackingFilter::~InterfacePackingFilter ( )

virtual

Member Function Documentation

bool protocols::matdes::InterfacePackingFilter::apply ( core::pose::Pose const & pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, protocols::matdes::TR, and upper_threshold_.

protocols::filters::FilterOP protocols::matdes::InterfacePackingFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References InterfacePackingFilter().

core::Real protocols::matdes::InterfacePackingFilter::compute ( core::pose::Pose const & pose ) const

References core::scoring::packing::HolesResult::atom_scores, core::scoring::packing::compute_holes_score(), contact_dist_, distance_cutoff_, numeric::xyzVector< class >::distance_squared(), core::pose::Pose::fold_tree(), basic::database::full_name(), core::pose::symmetry::get_buildingblock_and_neighbor_subs(), core::pose::symmetry::get_intracomponent_and_neighbor_resis(), core::pose::symmetry::get_sym_aware_jump_num(), multicomp_, core::conformation::Residue::nheavyatoms(), core::kinematics::FoldTree::partition_by_jump(), core::pose::symmetry::partition_by_symm_jumps(), core::io::pdb::pose_from_pose(), core::pose::Pose::residue(), runtime_assert, protocols::loops::start, utility::string_split(), core::pose::symmetry::sym_dof_jump_num(), sym_dof_names_, core::pose::symmetry::symmetry_info(), core::pose::Pose::total_residue(), protocols::matdes::TR, and core::conformation::Residue::xyz().

Referenced by apply(), report(), and report_sm().

core::Real protocols::matdes::InterfacePackingFilter::contact_dist ( ) const

References contact_dist_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::contact_dist ( core::Real const c )

References contact_dist_.

core::Real protocols::matdes::InterfacePackingFilter::distance_cutoff ( ) const

References distance_cutoff_.

Referenced by parse_def(), and parse_my_tag().

void protocols::matdes::InterfacePackingFilter::distance_cutoff ( core::Real const d )

References distance_cutoff_.

protocols::filters::FilterOP protocols::matdes::InterfacePackingFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References InterfacePackingFilter().

core::Real protocols::matdes::InterfacePackingFilter::lower_threshold ( ) const

References lower_threshold_.

Referenced by parse_def(), and parse_my_tag().

void protocols::matdes::InterfacePackingFilter::lower_threshold ( core::Real const l )

References lower_threshold_.

bool protocols::matdes::InterfacePackingFilter::multicomp ( ) const

References multicomp_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::multicomp ( bool const multicomp )

References multicomp_.

void protocols::matdes::InterfacePackingFilter::parse_def	(	utility::lua::LuaObject const &	def,
		utility::lua::LuaObject const &	score_fxns,
		utility::lua::LuaObject const &	tasks
	)

virtual

Reimplemented from protocols::filters::Filter.

References distance_cutoff(), lower_threshold(), protocols::matdes::TR, and upper_threshold().

void protocols::matdes::InterfacePackingFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)