Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::CircularPermutationFinder Class Reference

#include <CircularPermutationFinder.hh>

Public Member Functions

 CircularPermutationFinder ()
 
virtual ~CircularPermutationFinder ()
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
 
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &)
 
core::Real rmsd () const
 
void rmsd (core::Real const c)
 
std::string filename () const
 
void filename (std::string const s)
 
void N_C_distance (core::Real const r)
 
core::Real N_C_distance () const
 
void circular_permutation (core::pose::Pose const &pose, core::Size const chainA, core::Size const chainB) const
 
bool align_only_interface () const
 
void align_only_interface (bool const c)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Real rmsd_
 
core::Real N_C_distance_
 
std::string filename_
 
bool align_only_interface_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::CircularPermutationFinder::CircularPermutationFinder ( )

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::CircularPermutationFinder::~CircularPermutationFinder ( )
virtual

Member Function Documentation

bool protocols::simple_filters::CircularPermutationFinder::align_only_interface ( ) const
inline
void protocols::simple_filters::CircularPermutationFinder::align_only_interface ( bool const  c)
inline

References align_only_interface_.

bool protocols::simple_filters::CircularPermutationFinder::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References circular_permutation(), core::pose::Pose::conformation(), and core::conformation::Conformation::num_chains().

void protocols::simple_filters::CircularPermutationFinder::circular_permutation ( core::pose::Pose const &  pose,
core::Size const  chainA,
core::Size const  chainB 
) const
filters::FilterOP protocols::simple_filters::CircularPermutationFinder::clone ( ) const
inlinevirtual
std::string protocols::simple_filters::CircularPermutationFinder::filename ( ) const
inline

References filename_.

Referenced by parse_my_tag().

void protocols::simple_filters::CircularPermutationFinder::filename ( std::string const  s)
inline

References filename_.

filters::FilterOP protocols::simple_filters::CircularPermutationFinder::fresh_instance ( ) const
inlinevirtual
void protocols::simple_filters::CircularPermutationFinder::N_C_distance ( core::Real const  r)
inline

References N_C_distance_.

core::Real protocols::simple_filters::CircularPermutationFinder::N_C_distance ( ) const
inline

References N_C_distance_.

Referenced by circular_permutation(), and parse_my_tag().

void protocols::simple_filters::CircularPermutationFinder::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap ,
filters::Filters_map const &  filters,
moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::simple_filters::CircularPermutationFinder::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

core::Real protocols::simple_filters::CircularPermutationFinder::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

core::Real protocols::simple_filters::CircularPermutationFinder::rmsd ( ) const
inline

References rmsd_.

Referenced by circular_permutation(), and parse_my_tag().

void protocols::simple_filters::CircularPermutationFinder::rmsd ( core::Real const  c)
inline

References rmsd_.

Member Data Documentation

bool protocols::simple_filters::CircularPermutationFinder::align_only_interface_
private

Referenced by align_only_interface().

std::string protocols::simple_filters::CircularPermutationFinder::filename_
private
core::Real protocols::simple_filters::CircularPermutationFinder::N_C_distance_
private

Referenced by N_C_distance().

core::Real protocols::simple_filters::CircularPermutationFinder::rmsd_
private

Referenced by rmsd().


The documentation for this class was generated from the following files: