RNA_Minimizer.cc File Reference

protocols that are specific to RNA_Minimizer More...

#include <protocols/farna/RNA_Minimizer.hh>
#include <protocols/toolbox/AllowInsert.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/farna/util.hh>
#include <protocols/farna/RNA_LoopCloser.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/id/TorsionID.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <protocols/simple_moves/ConstrainToIdealMover.hh>
#include <basic/options/option.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/rotamer_trials.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <vector>
#include <string>
#include <iostream>
#include <sstream>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/FoldTree.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::farna

Functions
std::ostream &	protocols::farna::operator<< (std::ostream &os, RNA_Minimizer const &mover)

Variables
static basic::Tracer	TR ("protocols.rna.RNA_Minimizer")

Detailed Description

protocols that are specific to RNA_Minimizer

Detailed:

Author

Rhiju Das (rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu), Parin Sripakdeevong (sripa.nosp@m.kpa@.nosp@m.stanf.nosp@m.ord..nosp@m.edu)

Variable Documentation

basic::Tracer TR("protocols.rna.RNA_Minimizer")

static