Rosetta Protocols  2014.35
Public Member Functions | List of all members
protocols::noesy_assign::PeakFileFormat_xeasy Class Reference

#include <PeakFileFormat.hh>

Public Member Functions

 PeakFileFormat_xeasy ()
 
- Public Member Functions inherited from protocols::noesy_assign::PeakFileFormat
 PeakFileFormat ()
 
virtual ~PeakFileFormat ()
 
virtual void write_peak (std::ostream &, core::Size ct, CrossPeak const &) const
 
virtual void write_resonances (std::ostream &, CrossPeak const &) const
 
virtual void write_strength (std::ostream &, CrossPeak const &) const
 
virtual void write_assignments (std::ostream &, CrossPeak const &, std::string const &first_line_end) const
 
virtual void write_assignment (std::ostream &, PeakAssignment const &) const
 
virtual void write_assignment_indent (std::ostream &, CrossPeak const &) const
 
virtual void write_assignment_stats (std::ostream &os, PeakAssignment &pa) const
 
virtual void write_nil_assignment (std::ostream &) const
 
virtual void read_resonances (std::istream &, CrossPeak &) const
 
virtual void read_assignments (std::istream &is, std::istream &rest_line, CrossPeak &, std::string &next_line) const
 
virtual void read_strength (std::istream &, CrossPeak &) const
 
virtual CrossPeakOP read_peak (std::istream &, std::string &next_line) const
 
virtual void read_header (std::istream &, std::string &next_line)
 
virtual void output_diagnosis (std::ostream &) const
 
virtual void set_format_from_peak (CrossPeak const &)
 
virtual void write_header (std::ostream &)
 
virtual bool compatible_with_current_format (CrossPeak const &) const
 
void set_write_atom_names (bool setting=true)
 
bool write_atom_names () const
 
core::Size ncol () const
 
- Public Member Functions inherited from protocols::noesy_assign::PeakFileFormat_Base
 PeakFileFormat_Base ()
 
virtual ~PeakFileFormat_Base ()
 
void set_filename (std::string str)
 
std::string const & filename () const
 
bool ignore_assignments () const
 
void set_ignore_assignments (bool setting=true)
 
bool write_only_highest_VC () const
 
void set_write_only_highest_VC (bool setting=true)
 
core::Real min_VC_to_write () const
 
void set_min_VC_to_write (core::Real setting)
 
bool ignore_negative_intensity () const
 
void set_ignore_negative_intensity (bool setting=true)
 
void set_minimum_peak_intensity (core::Real setting)
 
core::Real minimum_peak_intensity () const
 

Additional Inherited Members

- Static Public Member Functions inherited from protocols::noesy_assign::PeakFileFormat
static void register_options ()
 
- Protected Attributes inherited from protocols::noesy_assign::PeakFileFormat
utility::vector1< std::stringcolumn_labels_
 
utility::vector1< core::Sizecol2proton_
 
utility::vector1< boolcol2islabel_
 
- Protected Attributes inherited from protocols::noesy_assign::PeakFileFormat_Base
CrossPeakInfoOP info1_
 
CrossPeakInfoOP info2_
 
std::string filename_
 

Constructor & Destructor Documentation

protocols::noesy_assign::PeakFileFormat_xeasy::PeakFileFormat_xeasy ( )
inline

The documentation for this class was generated from the following file: