protocols::fldsgn::filters::HelixKinkFilter Class Reference

#include <HelixKinkFilter.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef std::string	String
typedef core::Real	Real
typedef core::Size	Size
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	HelixKinkFilter ()
	HelixKinkFilter (HelixKinkFilter const &rval)
virtual	~HelixKinkFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
virtual std::string	name () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	bend_angle_
String	secstruct_
String	string_resnums_
bool	select_resnums_
bool	select_range_
core::Size	helix_start_
core::Size	helix_end_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::filters::HelixKinkFilter::DataMap

typedef protocols::filters::Filter protocols::fldsgn::filters::HelixKinkFilter::Filter

typedef protocols::filters::FilterOP protocols::fldsgn::filters::HelixKinkFilter::FilterOP

typedef protocols::filters::Filters_map protocols::fldsgn::filters::HelixKinkFilter::Filters_map

typedef protocols::moves::Movers_map protocols::fldsgn::filters::HelixKinkFilter::Movers_map

typedef core::pose::Pose protocols::fldsgn::filters::HelixKinkFilter::Pose

typedef core::Real protocols::fldsgn::filters::HelixKinkFilter::Real

typedef core::Size protocols::fldsgn::filters::HelixKinkFilter::Size

typedef std::string protocols::fldsgn::filters::HelixKinkFilter::String

typedef protocols::filters::Filter protocols::fldsgn::filters::HelixKinkFilter::Super

typedef utility::tag::TagCOP protocols::fldsgn::filters::HelixKinkFilter::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::filters::HelixKinkFilter::HelixKinkFilter

(

)

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::HelixKinkFilter::HelixKinkFilter

(

HelixKinkFilter const &

rval

)

virtual protocols::fldsgn::filters::HelixKinkFilter::~HelixKinkFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::fldsgn::filters::HelixKinkFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References begin, bend_angle_, protocols::fldsgn::topology::check_kink_helix(), core::scoring::Energies::data(), end, core::pose::Pose::energies(), core::pose::get_resnum_list_ordered(), basic::datacache::BasicDataCache::has(), core::scoring::EnergiesCacheableDataType::HBOND_SET, HBOND_SET, helix_end_, helix_start_, core::pose::Pose::secstruct(), secstruct, secstruct_, select_range_, select_resnums_, string_resnums_, core::pose::Pose::total_residue(), and protocols::fldsgn::TR.

virtual FilterOP protocols::fldsgn::filters::HelixKinkFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References HelixKinkFilter().

virtual FilterOP protocols::fldsgn::filters::HelixKinkFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References HelixKinkFilter().

virtual std::string protocols::fldsgn::filters::HelixKinkFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::fldsgn::filters::HelixKinkFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References bend_angle_, blueprint, helix_end_, helix_start_, protocols::jd2::parser::BluePrint::secstruct(), secstruct_, select_range_, select_resnums_, string_resnums_, protocols::fldsgn::TR, and utility_exit_with_message.

Member Data Documentation

Real protocols::fldsgn::filters::HelixKinkFilter::bend_angle_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::HelixKinkFilter::helix_end_

private

Referenced by apply(), and parse_my_tag().

core::Size protocols::fldsgn::filters::HelixKinkFilter::helix_start_

private

Referenced by apply(), and parse_my_tag().

String protocols::fldsgn::filters::HelixKinkFilter::secstruct_

private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::HelixKinkFilter::select_range_

private

Referenced by apply(), and parse_my_tag().

bool protocols::fldsgn::filters::HelixKinkFilter::select_resnums_

private

Referenced by apply(), and parse_my_tag().

String protocols::fldsgn::filters::HelixKinkFilter::string_resnums_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/HelixKinkFilter.hh
• src/protocols/fldsgn/filters/HelixKinkFilter.cc