protocols::frag_picker::quota Namespace Reference

Classes
class	ABEGO_SS_Config
	read a config file for quota selector More...
class	ABEGO_SS_Map
	represents a single pool used by quota selector More...
class	ABEGO_SS_Pool
	represents a single pool used by quota selector More...
struct	missing_fraction_sorter_biggest_first
struct	quota_limits_sorter_biggest_first
struct	quota_limits_sorter_smallest_first
class	QuotaCollector
	A base class for collecting fragments. More...
class	QuotaConfig
	read a config file for quota selector More...
class	QuotaPool
	represents a single pool used by quota selector More...
class	QuotaSelector
	selects a given number of fragments using a quota scheme More...
class	SecondaryStructurePool
	represents a single pool used by quota selector More...
class	TorsionBinPool
	represents a single pool used by quota selector More...

Typedefs
typedef utility::pointer::owning_ptr < ABEGO_SS_Map >	ABEGO_SS_MapOP
typedef utility::pointer::owning_ptr < ABEGO_SS_Map const >	ABEGO_SS_MapCOP
typedef utility::pointer::owning_ptr < ABEGO_SS_Pool >	ABEGO_SS_PoolOP
typedef utility::pointer::owning_ptr < ABEGO_SS_Pool const >	ABEGO_SS_PoolCOP
typedef LazySortedVector1 < std::pair < FragmentCandidateOP, scores::FragmentScoreMapOP > , CompareByScoreCombination >	BoundedQuotaContainer
typedef utility::pointer::owning_ptr < BoundedQuotaContainer >	BoundedQuotaContainerOP
typedef utility::pointer::owning_ptr < QuotaCollector >	QuotaCollectorOP
typedef utility::pointer::owning_ptr < QuotaCollector const >	QuotaCollectorCOP
typedef utility::pointer::owning_ptr < QuotaPool >	QuotaPoolOP
typedef utility::pointer::owning_ptr < QuotaPool const >	QuotaPoolCOP
typedef utility::pointer::owning_ptr < QuotaSelector >	QuotaSelectorOP
typedef utility::pointer::owning_ptr < QuotaSelector const >	QuotaSelectorCOP
typedef utility::pointer::owning_ptr < SecondaryStructurePool >	SecondaryStructurePoolOP
typedef utility::pointer::owning_ptr < SecondaryStructurePool const >	SecondaryStructurePoolCOP

Functions
Size	torsion2big_bin_id (core::Real const phi, core::Real const psi, core::Real const omega)
Size	abego_index (char abego_class)
Size	ss_index (char ss_class)

Variables
static basic::Tracer	trABEGO_SS_Config ("protocols.frag_picker.quota.ABEGO_SS_Config")
static basic::Tracer	trABEGO_SS_Pool ("protocols.frag_picker.quota.ABEGO_SS_Pool")
static basic::Tracer	trQuotaCollector ("protocols.frag_picker.quota.QuotaCollector")
static basic::Tracer	trQuotaConfig ("protocols.frag_picker.quota.QuotaConfig")
static basic::Tracer	trQuotaSelector ("protocols.frag_picker.quota.QuotaSelector")
struct protocols::frag_picker::quota::quota_limits_sorter_biggest_first	mysorter_biggest_first
struct protocols::frag_picker::quota::quota_limits_sorter_smallest_first	mysorter_smallest_first
struct protocols::frag_picker::quota::missing_fraction_sorter_biggest_first	mysorter_missing_fraction_biggest_first
static basic::Tracer	trSecondaryStructurePool ("protocols.frag_picker.quota.SecondaryStructurePool")
static basic::Tracer	trTorsionBinPool ("protocols.frag_picker.quota.TorsionBinPool")

Typedef Documentation

typedef utility::pointer::owning_ptr<ABEGO_SS_Map const> protocols::frag_picker::quota::ABEGO_SS_MapCOP

typedef utility::pointer::owning_ptr<ABEGO_SS_Map> protocols::frag_picker::quota::ABEGO_SS_MapOP

typedef utility::pointer::owning_ptr<ABEGO_SS_Pool const> protocols::frag_picker::quota::ABEGO_SS_PoolCOP

typedef utility::pointer::owning_ptr<ABEGO_SS_Pool> protocols::frag_picker::quota::ABEGO_SS_PoolOP

typedef LazySortedVector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP >, CompareByScoreCombination > protocols::frag_picker::quota::BoundedQuotaContainer

typedef utility::pointer::owning_ptr< BoundedQuotaContainer > protocols::frag_picker::quota::BoundedQuotaContainerOP

typedef utility::pointer::owning_ptr<QuotaCollector const> protocols::frag_picker::quota::QuotaCollectorCOP

typedef utility::pointer::owning_ptr<QuotaCollector> protocols::frag_picker::quota::QuotaCollectorOP

typedef utility::pointer::owning_ptr<QuotaPool const> protocols::frag_picker::quota::QuotaPoolCOP

typedef utility::pointer::owning_ptr<QuotaPool> protocols::frag_picker::quota::QuotaPoolOP

typedef utility::pointer::owning_ptr<QuotaSelector const> protocols::frag_picker::quota::QuotaSelectorCOP

typedef utility::pointer::owning_ptr<QuotaSelector> protocols::frag_picker::quota::QuotaSelectorOP

typedef utility::pointer::owning_ptr<SecondaryStructurePool const> protocols::frag_picker::quota::SecondaryStructurePoolCOP

typedef utility::pointer::owning_ptr<SecondaryStructurePool> protocols::frag_picker::quota::SecondaryStructurePoolOP

Function Documentation

Size protocols::frag_picker::quota::abego_index

(

char

abego_class

)

References ss, and utility_exit_with_message.

Referenced by protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config(), and protocols::frag_picker::quota::ABEGO_SS_Map::check_status().

Size protocols::frag_picker::quota::ss_index

(

char

ss_class

)

References ss, and utility_exit_with_message.

Referenced by protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config(), protocols::frag_picker::quota::ABEGO_SS_Map::check_status(), and protocols::dna::DnaInterfacePacker::protein_scan().

Size protocols::frag_picker::quota::torsion2big_bin_id	(	core::Real const	phi,
		core::Real const	psi,
		core::Real const	omega
	)

Referenced by protocols::frag_picker::quota::ABEGO_SS_Pool::could_be_accepted(), protocols::frag_picker::scores::ABEGO_SS_Score::do_caching(), and protocols::frag_picker::scores::ABEGO_SS_Score::score().

Variable Documentation

struct protocols::frag_picker::quota::quota_limits_sorter_biggest_first protocols::frag_picker::quota::mysorter_biggest_first

Referenced by protocols::frag_picker::quota::QuotaSelector::push_the_limits(), and protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner().

struct protocols::frag_picker::quota::missing_fraction_sorter_biggest_first protocols::frag_picker::quota::mysorter_missing_fraction_biggest_first

Referenced by protocols::frag_picker::quota::QuotaSelector::push_the_limits().

struct protocols::frag_picker::quota::quota_limits_sorter_smallest_first protocols::frag_picker::quota::mysorter_smallest_first

basic::Tracer protocols::frag_picker::quota::trABEGO_SS_Config("protocols.frag_picker.quota.ABEGO_SS_Config")

static

basic::Tracer protocols::frag_picker::quota::trABEGO_SS_Pool("protocols.frag_picker.quota.ABEGO_SS_Pool")

static

Referenced by protocols::frag_picker::quota::ABEGO_SS_Pool::ABEGO_SS_Pool().

basic::Tracer protocols::frag_picker::quota::trQuotaCollector("protocols.frag_picker.quota.QuotaCollector")

static

Referenced by protocols::frag_picker::quota::QuotaCollector::attach_secondary_structure_pools(), and protocols::frag_picker::quota::QuotaCollector::get_candidates().

basic::Tracer protocols::frag_picker::quota::trQuotaConfig("protocols.frag_picker.quota.QuotaConfig")

static

Referenced by protocols::frag_picker::quota::QuotaConfig::QuotaConfig().

basic::Tracer protocols::frag_picker::quota::trQuotaSelector("protocols.frag_picker.quota.QuotaSelector")

static

Referenced by protocols::frag_picker::quota::QuotaSelector::next_from_pool(), protocols::frag_picker::quota::QuotaSelector::push_the_limits(), protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner(), protocols::frag_picker::quota::QuotaSelector::QuotaSelector(), protocols::frag_picker::quota::QuotaSelector::select_fragments_200(), and protocols::frag_picker::quota::QuotaSelector::select_fragments_25_200().

basic::Tracer protocols::frag_picker::quota::trSecondaryStructurePool("protocols.frag_picker.quota.SecondaryStructurePool")

static

Referenced by protocols::frag_picker::quota::SecondaryStructurePool::SecondaryStructurePool().

basic::Tracer protocols::frag_picker::quota::trTorsionBinPool("protocols.frag_picker.quota.TorsionBinPool")

static