Rosetta Protocols  2014.35
protocols::coarse_rna::CoarseRNA_LoopCloser Member List

This is the complete list of members for protocols::coarse_rna::CoarseRNA_LoopCloser, including all inherited members.

a_little_verbose_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
allow_insert()protocols::coarse_rna::CoarseRNA_LoopCloser
allow_insert_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
apply(core::pose::Pose &pose)protocols::coarse_rna::CoarseRNA_LoopCloservirtual
apply(core::pose::Pose &pose, Size const &seqpos_moved)protocols::coarse_rna::CoarseRNA_LoopCloser
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_after_jump_change(core::pose::Pose &pose, Size const &jumpno)protocols::coarse_rna::CoarseRNA_LoopCloser
apply_solutions(core::pose::Pose &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
atom_ids_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
b_ang_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
b_len_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
backtrack(core::kinematics::tree::AtomCOP current_atom, utility::vector1< core::Size > &upstream_res, utility::vector1< bool > &is_upstream_res, core::pose::Pose const &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
backward_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
choose_best_solution_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
choose_best_solution_based_on_score_function(core::scoring::ScoreFunctionOP scorefxn)protocols::coarse_rna::CoarseRNA_LoopCloser
choose_least_perturb_solution()protocols::coarse_rna::CoarseRNA_LoopCloser
choose_least_perturb_solution_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
choose_random_solution_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::coarse_rna::CoarseRNA_LoopCloserinlinevirtual
close_at_all_cutpoints(core::pose::Pose &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
close_the_loop(core::pose::Pose &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
CoarseRNA_LoopCloser()protocols::coarse_rna::CoarseRNA_LoopCloser
create()protocols::moves::Movervirtual
cutpos_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
cutpos_list()protocols::coarse_rna::CoarseRNA_LoopCloserinline
cutpos_list_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
dof_ids1_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
dof_ids2_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_dof_ids_and_offsets(core::pose::Pose const &pose, utility::vector1< core::Real > const &dt_ang)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_forward_backward_res_by_backtracking(core::pose::Pose const &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_offset(core::pose::Pose const &pose, core::Size const &pivot, core::id::DOF_ID const &dof_id, core::Real const &original_torsion_value, utility::vector1< core::Real > &offset_save)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_pivot_res_and_scratch_res()protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_pivots(core::pose::Pose const &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
figure_out_which_cutpoints_were_affected(core::pose::Pose const &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
fill_chainTORS(core::pose::Pose const &pose, utility::vector1< core::id::NamedAtomID > const &atom_ids, utility::vector1< utility::vector1< core::Real > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len) const protocols::coarse_rna::CoarseRNA_LoopCloserprivate
fill_solution(core::pose::Pose &pose, Size const n) const protocols::coarse_rna::CoarseRNA_LoopCloserprivate
filter_path(utility::vector1< core::Size > &upstream_res, utility::vector1< bool > const &is_filter_res, core::pose::Pose const &pose)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
Filters_map typedefprotocols::moves::Mover
forward_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_all_solutions(core::pose::Pose &pose, utility::vector1< core::pose::PoseOP > &pose_list)protocols::coarse_rna::CoarseRNA_LoopCloser
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::coarse_rna::CoarseRNA_LoopCloservirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
is_backward_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
is_forward_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
is_pivot_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
is_scratch_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
nsol()protocols::coarse_rna::CoarseRNA_LoopCloserinline
nsol_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
offset_save1_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
offset_save2_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
operator=(Mover const &other)protocols::moves::Mover
output_chainTORS(utility::vector1< core::Real > const &dt_ang, utility::vector1< core::Real > const &db_ang, utility::vector1< core::Real > const &db_len) const protocols::coarse_rna::CoarseRNA_LoopCloserprivate
output_forward_backward_res()protocols::coarse_rna::CoarseRNA_LoopCloserprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
partition_definition()protocols::coarse_rna::CoarseRNA_LoopCloserinline
partition_definition_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
pivot_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
pivot_to_scratch_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
remove_res(utility::vector1< core::Size > &res_vector, Size const &res)protocols::coarse_rna::CoarseRNA_LoopCloserprivate
reset_status()protocols::moves::Mover
save_all_solutions_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
scratch_res_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
seqpos_moved_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
set_allow_insert(protocols::toolbox::AllowInsertOP allow_insert)protocols::coarse_rna::CoarseRNA_LoopCloser
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
t_ang_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
verbose_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
which_scratch_res_is_cut_protocols::coarse_rna::CoarseRNA_LoopCloserprivate
~Mover()protocols::moves::Movervirtual