protocols::enzdes::RemoveLigandFilter Class Reference

#include <RemoveLigandFilter.hh>

Public Types
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef protocols::filters::Filters_map	Filters_map
typedef protocols::moves::MoverOP	MoverOP
typedef core::pose::Pose	Pose

Public Member Functions
	RemoveLigandFilter ()
	RemoveLigandFilter (core::Real threshold)
	RemoveLigandFilter (RemoveLigandFilter const &rval)
bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
core::Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
FilterOP	clone () const
FilterOP	fresh_instance () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Real	threshold_
MoverOP	mover_
FilterOP	filter_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::enzdes::RemoveLigandFilter::Filter

typedef protocols::filters::FilterOP protocols::enzdes::RemoveLigandFilter::FilterOP

typedef protocols::filters::Filters_map protocols::enzdes::RemoveLigandFilter::Filters_map

typedef protocols::moves::MoverOP protocols::enzdes::RemoveLigandFilter::MoverOP

typedef core::pose::Pose protocols::enzdes::RemoveLigandFilter::Pose

Constructor & Destructor Documentation

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

)

References utility::pointer::owning_ptr< T >::get(), core::scoring::get_score_function(), movemap, protocols::simple_moves::MinMover::movemap(), mover_, protocols::simple_moves::MinMover::score_function(), and core::kinematics::MoveMap::set_bb().

Referenced by clone(), and fresh_instance().

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

core::Real

threshold

)

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

RemoveLigandFilter const &

rval

)

Member Function Documentation

bool protocols::enzdes::RemoveLigandFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References report_sm(), and threshold_.

FilterOP protocols::enzdes::RemoveLigandFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References RemoveLigandFilter().

FilterOP protocols::enzdes::RemoveLigandFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References RemoveLigandFilter().

void protocols::enzdes::RemoveLigandFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  , Filters_map const &  filters, protocols::moves::Movers_map const &  movers, core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

References filter_, protocols::environment::find_mover(), mover_, runtime_assert, threshold_, and protocols::enzdes::TR.

Real protocols::enzdes::RemoveLigandFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References protocols::moves::Mover::apply(), filter_, utility::pointer::owning_ptr< T >::get(), protocols::filters::Filter::get_type(), mover_, protocols::protein_interface_design::filters::RmsdFilter::reference_pose(), protocols::toolbox::pose_manipulation::remove_non_protein_residues(), protocols::protein_interface_design::filters::RmsdFilter::report_sm(), protocols::filters::Filter::report_sm(), protocols::protein_interface_design::filters::RmsdFilter::selection(), and protocols::protein_interface_design::filters::RmsdFilter::superimpose().

Referenced by apply().

Member Data Documentation

FilterOP protocols::enzdes::RemoveLigandFilter::filter_

private

Referenced by parse_my_tag(), and report_sm().

MoverOP protocols::enzdes::RemoveLigandFilter::mover_

private

Referenced by parse_my_tag(), RemoveLigandFilter(), and report_sm().

core::Real protocols::enzdes::RemoveLigandFilter::threshold_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/RemoveLigandFilter.hh
• src/protocols/enzdes/RemoveLigandFilter.cc