protocols::antibody::clusters::CDRClusterSet Class Reference

Class that can determine a CDR Cluster, hold that information, and give it out when asked. More...

#include <CDRClusterSet.hh>

Public Member Functions
	CDRClusterSet (AntibodyInfoAP ab_info)
	Constructor should only be used within AntibodyInfo, as it requires and is part of AbInfo. More...
virtual	~CDRClusterSet ()
void	identify_and_set_cdr_cluster (core::pose::Pose const &pose, CDRNameEnum cdr)
	Identify the cluster of the CDR, using numbering information held in AntibodyInfo. Replace data if already present. More...
void	clear ()
	Clear the held cluster data. More...
void	clear (CDRNameEnum cdr)
	Remove data of CDR using normal numbering. More...
bool	empty () const
bool	empty (CDRNameEnum cdr) const
CDRClusterOP	get_cluster_data (CDRNameEnum cdr) const
CDRClusterEnum	get_cluster (CDRNameEnum cdr) const

Private Member Functions
void	calculate_cdr_cluster (CDRNameEnum cdr, core::Size start, core::Size end)

Private Attributes
AntibodyInfoAP	ab_info_
CDRClusterMatcherOP	cluster_matcher_
vector1< CDRClusterOP >	clusters_

Detailed Description

Class that can determine a CDR Cluster, hold that information, and give it out when asked.

Constructor & Destructor Documentation

protocols::antibody::clusters::CDRClusterSet::CDRClusterSet

(

AntibodyInfoAP

ab_info

)

Constructor should only be used within AntibodyInfo, as it requires and is part of AbInfo.

protocols::antibody::clusters::CDRClusterSet::~CDRClusterSet ( )

virtual

Member Function Documentation

void protocols::antibody::clusters::CDRClusterSet::calculate_cdr_cluster ( CDRNameEnum  cdr, core::Size  start, core::Size  end  )

private

void protocols::antibody::clusters::CDRClusterSet::clear

(

)

Clear the held cluster data.

void protocols::antibody::clusters::CDRClusterSet::clear

(

CDRNameEnum

cdr

)

Remove data of CDR using normal numbering.

bool protocols::antibody::clusters::CDRClusterSet::empty

(

)

const

References empty.

bool protocols::antibody::clusters::CDRClusterSet::empty

(

CDRNameEnum

cdr

)

const

CDRClusterEnum protocols::antibody::clusters::CDRClusterSet::get_cluster

(

CDRNameEnum

cdr

)

const

References protocols::antibody::clusters::NA.

CDRClusterOP protocols::antibody::clusters::CDRClusterSet::get_cluster_data

(

CDRNameEnum

cdr

)

const

void protocols::antibody::clusters::CDRClusterSet::identify_and_set_cdr_cluster	(	core::pose::Pose const &	pose,
		CDRNameEnum	cdr
	)

Identify the cluster of the CDR, using numbering information held in AntibodyInfo. Replace data if already present.

References cluster, end, protocols::antibody::North, and protocols::loops::start.

Member Data Documentation

AntibodyInfoAP protocols::antibody::clusters::CDRClusterSet::ab_info_

private

CDRClusterMatcherOP protocols::antibody::clusters::CDRClusterSet::cluster_matcher_

private

vector1<CDRClusterOP> protocols::antibody::clusters::CDRClusterSet::clusters_

private

---

The documentation for this class was generated from the following files:

• src/protocols/antibody/clusters/CDRClusterSet.hh
• src/protocols/antibody/clusters/CDRClusterSet.cc