Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler Class Reference

#include <InputStreamStepWiseSampler.hh>

Public Member Functions

 InputStreamStepWiseSampler (stepwise::modeler::protein::InputStreamWithResidueInfoOP input_stream)
 InputStreamStepWiseSampler (stepwise::modeler::protein::InputStreamWithResidueInfoOP input_stream, stepwise::legacy::modeler::protein::StepWiseProteinPoseSetupCOP stepwise_pose_setup)
 ~InputStreamStepWiseSampler ()
virtual void reset ()
 Reset to the first (or random if random()) rotamer. More...
virtual core::Size size () const
 Get the total number of rotamers in sampler. More...
virtual void set_id (Size const setting)
 set ID – how StepWiseSamplerSizedComb controls StepWiseSamplerSized. Need some extra work here with InputStreamStepWiseSampler. More...
virtual void operator++ ()
 Move to next rotamer. More...
virtual void apply (core::pose::Pose &, core::Size const )
 Apply the i-th rotamer to pose. More...
virtual std::string get_name () const
 Name of the class. More...
virtual StepWiseSamplerType type () const
 Type of class (see enum in StepWiseSamplerTypes.hh) More...
- Public Member Functions inherited from protocols::stepwise::sampler::StepWiseSamplerSized
 StepWiseSamplerSized ()
virtual ~StepWiseSamplerSized ()
virtual void init ()
 Initialization. More...
virtual bool not_end () const
 Check if reach the end of rotamer list. More...
void apply (core::pose::Pose &pose)
 Apply the current rotamer to pose. More...
Size const & id () const
virtual void fast_forward ()
virtual void show (std::ostream &out, Size const indent=0) const
 output summary of class More...
- Public Member Functions inherited from protocols::stepwise::sampler::StepWiseSamplerBase
 StepWiseSamplerBase ()
virtual ~StepWiseSamplerBase ()
virtual bool random () const
 Check if is random modeler. More...
virtual void set_random (bool const setting)
 Set the random modeler state. More...
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
virtual ~Mover ()
virtual MoverSP create ()
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void parse_state (SerializableState const &state)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
virtual void save_state (SerializableState &state)
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 Mover (Mover const &other)
Moveroperator= (Mover const &other)
 assignment operator More...
virtual core::Real last_proposal_density_ratio ()
std::string const & type () const
void set_type (std::string const &setting)
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
void set_current_tag (std::string const &new_tag)
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
PoseCOP get_input_pose () const
PoseCOP get_native_pose () const
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
void type (const std::string &type_in)
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
std::string get_type () const
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
virtual Stringsinfo ()
 non-const accessor More...
virtual Strings const & info () const
 const accessor More...
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
void set_current_job (protocols::jobdist::BasicJobCOP job)
jobdist::BasicJobCOP get_current_job () const
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...

Private Attributes

stepwise::modeler::protein::InputStreamWithResidueInfoOP input_stream_
stepwise::legacy::modeler::protein::StepWiseProteinPoseSetupCOP stepwise_pose_setup_
Size size_

Additional Inherited Members

- Public Types inherited from protocols::stepwise::sampler::StepWiseSamplerBase
typedef utility::vector1
< core::Real
- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
typedef core::pose::Pose Pose
typedef core::pose::PoseCOP PoseCOP
typedef std::list< std::stringStrings
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
static void register_options ()
 Overload this static method if you access options within the mover. More...
- Protected Member Functions inherited from protocols::stepwise::sampler::StepWiseSamplerBase
bool is_init () const
 Check if the sampler has been initialized. More...
void set_init (bool const setting)
 Set the initialization state. More...
template<class T >
void set_and_reinit (T &params, T const &setting)
 Set value of a parameter, return to pre-init state. More...
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
- Protected Attributes inherited from protocols::stepwise::sampler::StepWiseSamplerSized
core::Size id_

Constructor & Destructor Documentation

protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::InputStreamStepWiseSampler ( stepwise::modeler::protein::InputStreamWithResidueInfoOP  input_stream)
protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::InputStreamStepWiseSampler ( stepwise::modeler::protein::InputStreamWithResidueInfoOP  input_stream,
stepwise::legacy::modeler::protein::StepWiseProteinPoseSetupCOP  stepwise_pose_setup 
protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::~InputStreamStepWiseSampler ( )

Member Function Documentation

void protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::apply ( core::pose::Pose pose,
core::Size const  id 
virtual std::string protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::get_name ( ) const

Name of the class.

Reimplemented from protocols::stepwise::sampler::StepWiseSamplerSized.

void protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::operator++ ( )
void protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::reset ( void  )
void protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::set_id ( Size const  setting)
virtual core::Size protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::size ( ) const

Get the total number of rotamers in sampler.

Implements protocols::stepwise::sampler::StepWiseSamplerSized.

References size_.

Referenced by operator++().

virtual StepWiseSamplerType protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::type ( ) const

Type of class (see enum in StepWiseSamplerTypes.hh)

Reimplemented from protocols::stepwise::sampler::StepWiseSamplerSized.

References protocols::stepwise::sampler::INPUT_STREAM.

Member Data Documentation

stepwise::modeler::protein::InputStreamWithResidueInfoOP protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::input_stream_

Referenced by apply(), operator++(), and reset().

Size protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::size_

Referenced by size().

stepwise::legacy::modeler::protein::StepWiseProteinPoseSetupCOP protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler::stepwise_pose_setup_

Referenced by apply().

The documentation for this class was generated from the following files: