Rosetta Protocols  2014.35
Public Types | Public Member Functions | Private Attributes | List of all members
protocols::frags::TorsionFragmentMover Class Reference

#include <TorsionFragment.hh>

Public Types

typedef core::Real Real
typedef core::Size Size
- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
typedef core::pose::Pose Pose
typedef core::pose::PoseCOP PoseCOP
typedef std::list< std::stringStrings

Public Member Functions

 TorsionFragmentMover (FragLibCOP fraglib, core::kinematics::MoveMapCOP mm)
std::string get_name () const
 Each derived class must specify its name. The class name. More...
void check_ss_lengths (bool const setting)
void min_len_strand (Size const setting)
void min_len_helix (Size const setting)
Size frag_size () const
Size last_inserted_frag_begin () const
void frag_size (Size const setting)
bool pose_passes_ss_length_check (core::pose::Pose const &pose) const
void apply (core::pose::Pose &pose)
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
virtual ~Mover ()
virtual MoverSP create ()
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void parse_state (SerializableState const &state)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)
virtual void save_state (SerializableState &state)
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 Mover (Mover const &other)
Moveroperator= (Mover const &other)
 assignment operator More...
virtual core::Real last_proposal_density_ratio ()
std::string const & type () const
void set_type (std::string const &setting)
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
void set_current_tag (std::string const &new_tag)
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
PoseCOP get_input_pose () const
PoseCOP get_native_pose () const
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
void type (const std::string &type_in)
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
std::string get_type () const
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
virtual Stringsinfo ()
 non-const accessor More...
virtual Strings const & info () const
 const accessor More...
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
void set_current_job (protocols::jobdist::BasicJobCOP job)
jobdist::BasicJobCOP get_current_job () const
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...

Private Attributes

FragLibCOP fraglib_
core::kinematics::MoveMapCOP mm_
Size frag_size_
bool check_ss_lengths_
Size min_len_helix_
Size min_len_strand_
Size last_inserted_frag_begin_

Additional Inherited Members

- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
static void register_options ()
 Overload this static method if you access options within the mover. More...
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::frags::TorsionFragmentMover::TorsionFragmentMover ( FragLibCOP  fraglib,
core::kinematics::MoveMapCOP  mm 

Member Function Documentation

void protocols::frags::TorsionFragmentMover::apply ( core::pose::Pose pose)
void protocols::frags::TorsionFragmentMover::check_ss_lengths ( bool const  setting)

References check_ss_lengths_.

Size protocols::frags::TorsionFragmentMover::frag_size ( ) const

References frag_size_.

void protocols::frags::TorsionFragmentMover::frag_size ( Size const  setting)

References frag_size_.

std::string protocols::frags::TorsionFragmentMover::get_name ( ) const

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

Size protocols::frags::TorsionFragmentMover::last_inserted_frag_begin ( ) const
void protocols::frags::TorsionFragmentMover::min_len_helix ( Size const  setting)

References min_len_helix_.

void protocols::frags::TorsionFragmentMover::min_len_strand ( Size const  setting)

References min_len_strand_.

bool protocols::frags::TorsionFragmentMover::pose_passes_ss_length_check ( core::pose::Pose const &  pose) const

Member Data Documentation

bool protocols::frags::TorsionFragmentMover::check_ss_lengths_

Referenced by apply(), and check_ss_lengths().

Size protocols::frags::TorsionFragmentMover::frag_size_

Referenced by apply(), and frag_size().

FragLibCOP protocols::frags::TorsionFragmentMover::fraglib_

Referenced by apply().

Size protocols::frags::TorsionFragmentMover::last_inserted_frag_begin_

Referenced by apply(), and last_inserted_frag_begin().

Size protocols::frags::TorsionFragmentMover::min_len_helix_
Size protocols::frags::TorsionFragmentMover::min_len_strand_
core::kinematics::MoveMapCOP protocols::frags::TorsionFragmentMover::mm_

Referenced by apply().

The documentation for this class was generated from the following files: