Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::AlaScan Class Reference

#include <AlaScan.hh>

Public Member Functions

 AlaScan ()
 
 AlaScan (bool const chain1, bool const chain2, core::Size const repeats, core::Real const dist, core::scoring::ScoreFunctionCOP scorefxn, core::Size const jump, bool const symmetry)
 
bool apply (core::pose::Pose const &) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
void report_symmetry (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
 
void chain1 (bool const c1)
 
void chain2 (bool const c2)
 
void dist (core::Real const d)
 
void scorefxn (core::scoring::ScoreFunctionOP scorefxn)
 
core::Real ddG_for_single_residue (core::pose::Pose const &pose, core::Size const resi) const
 
bool chain1 () const
 
bool chain2 () const
 
core::Size repeats () const
 
void repeats (core::Size const r)
 
core::Size jump () const
 
void jump (core::Size const j)
 
core::Real dist () const
 
virtual ~AlaScan ()
 
void repack (bool const repack)
 
bool repack () const
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

bool chain1_
 
bool chain2_
 
core::Size repeats_
 
core::Real distance_threshold_
 
core::Size jump_
 
bool symmetry_
 
core::scoring::ScoreFunctionOP scorefxn_
 
bool repack_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::AlaScan::AlaScan ( )
inline

References filters.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::AlaScan::AlaScan ( bool const  chain1,
bool const  chain2,
core::Size const  repeats,
core::Real const  dist,
core::scoring::ScoreFunctionCOP  scorefxn,
core::Size const  jump = 1,
bool const  symmetry = false 
)
protocols::simple_filters::AlaScan::~AlaScan ( )
virtual

Member Function Documentation

bool protocols::simple_filters::AlaScan::apply ( core::pose::Pose const &  pose) const
inlinevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

void protocols::simple_filters::AlaScan::chain1 ( bool const  c1)
inline

References chain1_.

bool protocols::simple_filters::AlaScan::chain1 ( ) const
inline

References chain1_.

void protocols::simple_filters::AlaScan::chain2 ( bool const  c2)
inline

References chain2_.

bool protocols::simple_filters::AlaScan::chain2 ( ) const
inline

References chain2_.

filters::FilterOP protocols::simple_filters::AlaScan::clone ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References AlaScan().

core::Real protocols::simple_filters::AlaScan::ddG_for_single_residue ( core::pose::Pose const &  pose,
core::Size const  resi 
) const
void protocols::simple_filters::AlaScan::dist ( core::Real const  d)
inline

References distance_threshold_.

core::Real protocols::simple_filters::AlaScan::dist ( ) const
inline

References distance_threshold_.

filters::FilterOP protocols::simple_filters::AlaScan::fresh_instance ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References AlaScan().

core::Size protocols::simple_filters::AlaScan::jump ( ) const
inline
void protocols::simple_filters::AlaScan::jump ( core::Size const  j)
inline

References jump_.

void protocols::simple_filters::AlaScan::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::simple_filters::AlaScan::repack ( bool const  repack)
bool protocols::simple_filters::AlaScan::repack ( ) const

References repack_.

Referenced by ddG_for_single_residue(), and repack().

core::Size protocols::simple_filters::AlaScan::repeats ( ) const
inline
void protocols::simple_filters::AlaScan::repeats ( core::Size const  r)
inline

References repeats_.

void protocols::simple_filters::AlaScan::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual
core::Real protocols::simple_filters::AlaScan::report_sm ( core::pose::Pose const &  ) const
inlinevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::AlaScan::report_symmetry ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
void protocols::simple_filters::AlaScan::scorefxn ( core::scoring::ScoreFunctionOP  scorefxn)

Member Data Documentation

bool protocols::simple_filters::AlaScan::chain1_
private

Referenced by chain1().

bool protocols::simple_filters::AlaScan::chain2_
private

Referenced by chain2().

core::Real protocols::simple_filters::AlaScan::distance_threshold_
private

Referenced by dist(), report(), and report_symmetry().

core::Size protocols::simple_filters::AlaScan::jump_
private

Referenced by jump().

bool protocols::simple_filters::AlaScan::repack_
private

Referenced by repack().

core::Size protocols::simple_filters::AlaScan::repeats_
private
core::scoring::ScoreFunctionOP protocols::simple_filters::AlaScan::scorefxn_
private
bool protocols::simple_filters::AlaScan::symmetry_
private

Referenced by AlaScan().


The documentation for this class was generated from the following files: