protocols::matdes::GetRBDOFValues Class Reference

#include <GetRBDOFValues.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	GetRBDOFValues ()
	GetRBDOFValues (int jump, std::string dof_name, bool verb, char ax, bool disp, bool ang, core::Real init_d, core::Real init_a, bool get_init)
	GetRBDOFValues (GetRBDOFValues const &rval)
virtual	~GetRBDOFValues ()
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
virtual std::string	name () const
void	jump_id (core::Size const jump)
void	sym_dof_name (std::string const dof_name)
void	verbose (bool const verb)
void	axis (char const ax)
void	radial_disp (bool const disp)
void	angle (bool const ang)
void	init_disp (core::Real const init_d)
void	init_angle (core::Real const init_a)
void	get_init_value (bool const get_init)
core::Size	jump_id () const
std::string	sym_dof_name () const
bool	verbose () const
char	axis () const
bool	radial_disp () const
bool	angle () const
core::Real	init_disp () const
core::Real	init_angle () const
bool	get_init_value () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
virtual core::Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual void	report (std::ostream &out, Pose const &pose) const
core::Real	compute (Pose const &pose, bool const &verb, std::string const &dof_name, int const &jump, char const &ax, bool const &disp, bool const &ang, core::Real const &init_d, core::Real const &init_a, bool const &get_init) const
	get the translation and rotation for a user specified jump More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
int	jump_id_
std::string	sym_dof_name_
bool	verbose_
bool	radial_disp_
bool	angle_
bool	get_init_value_
char	axis_
core::Real	init_disp_
core::Real	init_angle_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::matdes::GetRBDOFValues::DataMap

typedef protocols::filters::Filter protocols::matdes::GetRBDOFValues::Filter

typedef protocols::filters::FilterOP protocols::matdes::GetRBDOFValues::FilterOP

typedef protocols::filters::Filters_map protocols::matdes::GetRBDOFValues::Filters_map

typedef protocols::moves::Movers_map protocols::matdes::GetRBDOFValues::Movers_map

typedef core::pose::Pose protocols::matdes::GetRBDOFValues::Pose

typedef core::Real protocols::matdes::GetRBDOFValues::Real

typedef protocols::filters::Filter protocols::matdes::GetRBDOFValues::Super

typedef utility::tag::TagCOP protocols::matdes::GetRBDOFValues::TagCOP

Constructor & Destructor Documentation

protocols::matdes::GetRBDOFValues::GetRBDOFValues

(

)

Referenced by clone(), and fresh_instance().

protocols::matdes::GetRBDOFValues::GetRBDOFValues	(	int	jump,
		std::string	dof_name,
		bool	verb,
		char	ax,
		bool	disp,
		bool	ang,
		core::Real	init_d,
		core::Real	init_a,
		bool	get_init
	)

protocols::matdes::GetRBDOFValues::GetRBDOFValues

(

GetRBDOFValues const &

rval

)

protocols::matdes::GetRBDOFValues::~GetRBDOFValues ( )

virtual

Member Function Documentation

void protocols::matdes::GetRBDOFValues::angle

(

bool const

ang

)

References angle_.

bool protocols::matdes::GetRBDOFValues::angle

(

)

const

References angle_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

bool protocols::matdes::GetRBDOFValues::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References angle(), axis(), compute(), get_init_value(), init_angle(), init_disp(), jump_id(), radial_disp(), sym_dof_name(), and verbose().

void protocols::matdes::GetRBDOFValues::axis

(

char const

ax

)

References axis_.

char protocols::matdes::GetRBDOFValues::axis

(

)

const

References axis_.

Referenced by apply(), compute(), parse_my_tag(), report(), and report_sm().

protocols::filters::FilterOP protocols::matdes::GetRBDOFValues::clone ( ) const

virtual

Implements protocols::filters::Filter.

References GetRBDOFValues().

core::Real protocols::matdes::GetRBDOFValues::compute	(	Pose const &	pose,
		bool const &	verb,
		std::string const &	dof_name,
		int const &	jump,
		char const &	ax,
		bool const &	disp,
		bool const &	ang,
		core::Real const &	init_d,
		core::Real const &	init_a,
		bool const &	get_init
	)		const

get the translation and rotation for a user specified jump

References axis(), protocols::jd2::JobDistributor::current_output_name(), numeric::conversions::degrees(), protocols::matdes::SymDofMoverSampler::get_angles(), protocols::matdes::SymDofMoverSampler::get_instance(), protocols::jd2::JobDistributor::get_instance(), protocols::matdes::SymDofMoverSampler::get_radial_disps(), core::kinematics::Jump::get_rotation(), core::pose::symmetry::get_sym_aware_jump_num(), protocols::matdes::SymDofMoverSampler::get_sym_dof_names(), core::kinematics::Jump::get_translation(), core::pose::Pose::jump(), numeric::rotation_axis(), sign(), core::pose::symmetry::sym_dof_jump_num(), sym_dof_names(), protocols::matdes::TR, numeric::truncate_and_serialize_xyz_vector(), utility_exit_with_message, numeric::xyzVector< class >::x(), numeric::xyzVector< class >::y(), and numeric::xyzVector< class >::z().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::matdes::GetRBDOFValues::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References GetRBDOFValues().

void protocols::matdes::GetRBDOFValues::get_init_value

(

bool const

get_init

)

References get_init_value_.

bool protocols::matdes::GetRBDOFValues::get_init_value

(

)

const

References get_init_value_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

void protocols::matdes::GetRBDOFValues::init_angle

(

core::Real const

init_a

)

References init_angle_.

core::Real protocols::matdes::GetRBDOFValues::init_angle

(

)

const

References init_angle_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

void protocols::matdes::GetRBDOFValues::init_disp

(

core::Real const

init_d

)

References init_disp_.

core::Real protocols::matdes::GetRBDOFValues::init_disp

(

)

const

References init_disp_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

void protocols::matdes::GetRBDOFValues::jump_id

(

core::Size const

jump

)

References jump_id_.

core::Size protocols::matdes::GetRBDOFValues::jump_id

(

)

const

References jump_id_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

virtual std::string protocols::matdes::GetRBDOFValues::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::matdes::GetRBDOFValues::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , protocols::filters::Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References angle(), axis(), get_init_value(), init_angle(), init_disp(), jump_id(), radial_disp(), sym_dof_name(), and verbose().

void protocols::matdes::GetRBDOFValues::radial_disp

(

bool const

disp

)

References radial_disp_.

bool protocols::matdes::GetRBDOFValues::radial_disp

(

)

const

References radial_disp_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

void protocols::matdes::GetRBDOFValues::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References angle(), axis(), compute(), get_init_value(), init_angle(), init_disp(), jump_id(), radial_disp(), and sym_dof_name().

core::Real protocols::matdes::GetRBDOFValues::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References angle(), axis(), compute(), get_init_value(), init_angle(), init_disp(), jump_id(), radial_disp(), and sym_dof_name().

void protocols::matdes::GetRBDOFValues::sym_dof_name

(

std::string const

dof_name

)

References sym_dof_name_.

std::string protocols::matdes::GetRBDOFValues::sym_dof_name

(

)

const

References sym_dof_name_.

Referenced by apply(), parse_my_tag(), report(), and report_sm().

void protocols::matdes::GetRBDOFValues::verbose

(

bool const

verb

)

References verbose_.

bool protocols::matdes::GetRBDOFValues::verbose

(

)

const

References verbose_.

Referenced by apply(), and parse_my_tag().

Member Data Documentation

bool protocols::matdes::GetRBDOFValues::angle_

private

Referenced by angle().

char protocols::matdes::GetRBDOFValues::axis_

private

Referenced by axis().

bool protocols::matdes::GetRBDOFValues::get_init_value_

private

Referenced by get_init_value().

core::Real protocols::matdes::GetRBDOFValues::init_angle_

private

Referenced by init_angle().

core::Real protocols::matdes::GetRBDOFValues::init_disp_

private

Referenced by init_disp().

int protocols::matdes::GetRBDOFValues::jump_id_

private

Referenced by jump_id().

bool protocols::matdes::GetRBDOFValues::radial_disp_

private

Referenced by radial_disp().

std::string protocols::matdes::GetRBDOFValues::sym_dof_name_

private

Referenced by sym_dof_name().

bool protocols::matdes::GetRBDOFValues::verbose_

private

Referenced by verbose().

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The documentation for this class was generated from the following files:

• src/protocols/matdes/GetRBDOFValues.hh
• src/protocols/matdes/GetRBDOFValues.cc