| ab_info_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| AntibodyGraftDesignMover(AntibodyInfoOP ab_info) | protocols::antibody::design::AntibodyGraftDesignMover | |
| AntibodyGraftDesignMover(AntibodyInfoOP ab_info, std::string instruction_path) | protocols::antibody::design::AntibodyGraftDesignMover | |
| apply(pose::Pose &pose) | protocols::antibody::design::AntibodyGraftDesignMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| benchmark_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| cdr_cluster_map_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| cdr_instructions_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| cdr_set_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| check_for_top_designs(pose::Pose &pose) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| constraint_map_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| create() | protocols::moves::Mover | virtual |
| dock_post_graft_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| dock_rounds_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| extend_native_cdrs(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| extend_native_cdrs_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| fix_pdb_info(pose::Pose &pose, CDRNameEnum cdr, CDRClusterEnum cluster, core::Size original_start, core::Size original_pdb_end) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_cdr_set_index_list() | protocols::antibody::design::AntibodyGraftDesignMover | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::antibody::design::AntibodyGraftDesignMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_top_designs() | protocols::antibody::design::AntibodyGraftDesignMover | inline |
| get_type() const | protocols::moves::Mover | inline |
| graft_cdr(pose::Pose &pose, CDRNameEnum cdr, core::Size index) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| graft_mover_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| graft_rounds_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initial_perturb_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| initialize_cdr_set() | protocols::antibody::design::AntibodyGraftDesignMover | private |
| instruction_path_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| max_linear_chainbreak_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| mc_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| modeler_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| native_clusters_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| num_top_designs_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| overhang_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| pack_post_graft_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| pdbmap_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| rb_min_post_graft_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| read_command_line_options() | protocols::antibody::design::AntibodyGraftDesignMover | private |
| read_instructions(std::string instruction_path) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| run_basic_mc_algorithm(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| run_deterministic_graft_algorithm(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| sampling_instructions_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| set_cdr(CDRNameEnum const cdr, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_cluster_centers_only(CDRNameEnum const cdr, bool setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_cluster_centers_only_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_max_length(CDRNameEnum const cdr, core::Size length) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_max_length_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size length) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_min_length(CDRNameEnum const cdr, core::Size length) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_min_length_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size length) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_range(CDRNameEnum const cdr_start, CDRNameEnum cdr_end, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_range_stay_in_native_cluster(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_range_stay_in_type(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size const type, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_set(CDRSet &cdr_set, CDRClusterMap &cdr_cluster_map, core::Size overhang) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_stay_in_native_cluster(CDRNameEnum const cdr, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cdr_stay_in_type(CDRNameEnum const cdr, core::Size const type, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cluster(CDRNameEnum const cdr, CDRClusterEnum const cluster, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_cluster_range(CDRNameEnum const cdr, CDRClusterEnum const cluster_start, CDRClusterEnum const cluster_end, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_default_graft_settings() | protocols::antibody::design::AntibodyGraftDesignMover | private |
| set_defaults() | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_dock_post_graft(bool dock_post_graft) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_dock_rounds(core::Size dock_rounds) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_graft_rounds(core::Size graft_rounds) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_keep_top_designs(core::Size top_designs) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_neighbor_sc(CDRNameEnum const cdr_name, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_min_neighbor_sc_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_min_rb(CDRNameEnum const cdr_name, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_min_rb_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_mintype(CDRNameEnum const cdr_name, MinTypeEnum mintype) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_mintype_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, MinTypeEnum mintype) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_pack_post_graft(bool pack_post_graft) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_rb_min_post_graft(bool rb_min_post_graft) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_scorefunction(ScoreFunctionOP scorefxn) | protocols::antibody::design::AntibodyGraftDesignMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_native_clusters(pose::Pose &pose) | protocols::antibody::design::AntibodyGraftDesignMover | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| top_designs_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| top_scores_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| total_permutations_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_deterministic_algorithm_ | protocols::antibody::design::AntibodyGraftDesignMover | private |
| ~AntibodyGraftDesignMover() | protocols::antibody::design::AntibodyGraftDesignMover | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7