Rosetta Protocols  2014.35
protocols::antibody::design::AntibodyGraftDesignMover Member List

This is the complete list of members for protocols::antibody::design::AntibodyGraftDesignMover, including all inherited members.

ab_info_protocols::antibody::design::AntibodyGraftDesignMoverprivate
AntibodyGraftDesignMover(AntibodyInfoOP ab_info)protocols::antibody::design::AntibodyGraftDesignMover
AntibodyGraftDesignMover(AntibodyInfoOP ab_info, std::string instruction_path)protocols::antibody::design::AntibodyGraftDesignMover
apply(pose::Pose &pose)protocols::antibody::design::AntibodyGraftDesignMovervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
benchmark_protocols::antibody::design::AntibodyGraftDesignMoverprivate
cdr_cluster_map_protocols::antibody::design::AntibodyGraftDesignMoverprivate
cdr_instructions_protocols::antibody::design::AntibodyGraftDesignMoverprivate
cdr_set_protocols::antibody::design::AntibodyGraftDesignMoverprivate
check_for_top_designs(pose::Pose &pose)protocols::antibody::design::AntibodyGraftDesignMoverprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
constraint_map_protocols::antibody::design::AntibodyGraftDesignMoverprivate
create()protocols::moves::Movervirtual
dock_post_graft_protocols::antibody::design::AntibodyGraftDesignMoverprivate
dock_rounds_protocols::antibody::design::AntibodyGraftDesignMoverprivate
extend_native_cdrs(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design)protocols::antibody::design::AntibodyGraftDesignMoverprivate
extend_native_cdrs_protocols::antibody::design::AntibodyGraftDesignMoverprivate
Filters_map typedefprotocols::moves::Mover
fix_pdb_info(pose::Pose &pose, CDRNameEnum cdr, CDRClusterEnum cluster, core::Size original_start, core::Size original_pdb_end)protocols::antibody::design::AntibodyGraftDesignMoverprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_cdr_set_index_list()protocols::antibody::design::AntibodyGraftDesignMoverprivate
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::antibody::design::AntibodyGraftDesignMovervirtual
get_native_pose() const protocols::moves::Mover
get_top_designs()protocols::antibody::design::AntibodyGraftDesignMoverinline
get_type() const protocols::moves::Moverinline
graft_cdr(pose::Pose &pose, CDRNameEnum cdr, core::Size index)protocols::antibody::design::AntibodyGraftDesignMoverprivate
graft_mover_protocols::antibody::design::AntibodyGraftDesignMoverprivate
graft_rounds_protocols::antibody::design::AntibodyGraftDesignMoverprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initial_perturb_protocols::antibody::design::AntibodyGraftDesignMoverprivate
initialize_cdr_set()protocols::antibody::design::AntibodyGraftDesignMoverprivate
instruction_path_protocols::antibody::design::AntibodyGraftDesignMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
max_linear_chainbreak_protocols::antibody::design::AntibodyGraftDesignMoverprivate
mc_protocols::antibody::design::AntibodyGraftDesignMoverprivate
modeler_protocols::antibody::design::AntibodyGraftDesignMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_clusters_protocols::antibody::design::AntibodyGraftDesignMoverprivate
num_top_designs_protocols::antibody::design::AntibodyGraftDesignMoverprivate
operator=(Mover const &other)protocols::moves::Mover
overhang_protocols::antibody::design::AntibodyGraftDesignMoverprivate
pack_post_graft_protocols::antibody::design::AntibodyGraftDesignMoverprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
pdbmap_protocols::antibody::design::AntibodyGraftDesignMoverprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
rb_min_post_graft_protocols::antibody::design::AntibodyGraftDesignMoverprivate
read_command_line_options()protocols::antibody::design::AntibodyGraftDesignMoverprivate
read_instructions(std::string instruction_path)protocols::antibody::design::AntibodyGraftDesignMoverprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
run_basic_mc_algorithm(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design)protocols::antibody::design::AntibodyGraftDesignMoverprivate
run_deterministic_graft_algorithm(pose::Pose &pose, vector1< CDRNameEnum > &cdrs_to_design)protocols::antibody::design::AntibodyGraftDesignMoverprivate
sampling_instructions_protocols::antibody::design::AntibodyGraftDesignMoverprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::antibody::design::AntibodyGraftDesignMoverprivate
set_cdr(CDRNameEnum const cdr, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_cluster_centers_only(CDRNameEnum const cdr, bool setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_cluster_centers_only_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_max_length(CDRNameEnum const cdr, core::Size length)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_max_length_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size length)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_min_length(CDRNameEnum const cdr, core::Size length)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_min_length_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size length)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_range(CDRNameEnum const cdr_start, CDRNameEnum cdr_end, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_range_stay_in_native_cluster(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_range_stay_in_type(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, core::Size const type, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_set(CDRSet &cdr_set, CDRClusterMap &cdr_cluster_map, core::Size overhang)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_stay_in_native_cluster(CDRNameEnum const cdr, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cdr_stay_in_type(CDRNameEnum const cdr, core::Size const type, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cluster(CDRNameEnum const cdr, CDRClusterEnum const cluster, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_cluster_range(CDRNameEnum const cdr, CDRClusterEnum const cluster_start, CDRClusterEnum const cluster_end, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default_graft_settings()protocols::antibody::design::AntibodyGraftDesignMoverprivate
set_defaults()protocols::antibody::design::AntibodyGraftDesignMover
set_dock_post_graft(bool dock_post_graft)protocols::antibody::design::AntibodyGraftDesignMover
set_dock_rounds(core::Size dock_rounds)protocols::antibody::design::AntibodyGraftDesignMover
set_graft_rounds(core::Size graft_rounds)protocols::antibody::design::AntibodyGraftDesignMover
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_keep_top_designs(core::Size top_designs)protocols::antibody::design::AntibodyGraftDesignMover
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_min_neighbor_sc(CDRNameEnum const cdr_name, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_min_neighbor_sc_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_min_rb(CDRNameEnum const cdr_name, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_min_rb_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, bool const setting)protocols::antibody::design::AntibodyGraftDesignMover
set_mintype(CDRNameEnum const cdr_name, MinTypeEnum mintype)protocols::antibody::design::AntibodyGraftDesignMover
set_mintype_range(CDRNameEnum const cdr_start, CDRNameEnum const cdr_end, MinTypeEnum mintype)protocols::antibody::design::AntibodyGraftDesignMover
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_pack_post_graft(bool pack_post_graft)protocols::antibody::design::AntibodyGraftDesignMover
set_rb_min_post_graft(bool rb_min_post_graft)protocols::antibody::design::AntibodyGraftDesignMover
set_scorefunction(ScoreFunctionOP scorefxn)protocols::antibody::design::AntibodyGraftDesignMover
set_type(std::string const &setting)protocols::moves::Moverinline
setup_native_clusters(pose::Pose &pose)protocols::antibody::design::AntibodyGraftDesignMoverprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
top_designs_protocols::antibody::design::AntibodyGraftDesignMoverprivate
top_scores_protocols::antibody::design::AntibodyGraftDesignMoverprivate
total_permutations_protocols::antibody::design::AntibodyGraftDesignMoverprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
use_deterministic_algorithm_protocols::antibody::design::AntibodyGraftDesignMoverprivate
~AntibodyGraftDesignMover()protocols::antibody::design::AntibodyGraftDesignMovervirtual
~Mover()protocols::moves::Movervirtual