| add_to_one_body_energies(ObjexxFCL::FArray1< PackerEnergy > &energies) | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| add_to_one_body_energy(int state, PackerEnergy energy) | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| alt_bb() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_info() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_is_being_considered() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_one_body_energy() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_total_energy() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_two_body_energies() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| alternate_state_two_body_energies(int ind) const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| bounding_radius_for_rotamers(int aatype, int bb) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| bounding_volumes_for_bb_for_aa_ | protocols::flexpack::interaction_graph::OTFFlexbbNode | private |
| closest_state_on_alt_bb() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| copy_alternate_to_current() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| count_dynamic_memory() const | protocols::flexpack::interaction_graph::OTFFlexbbNode | virtual |
| count_energy_to_node_in_my_fragtotalE(int edge_index) const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| curr_bb() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| curr_state_one_body_energy() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| curr_state_total_energy() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| curr_state_two_body_energies() | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| current_state() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| current_state_info() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| declare_all_rotamers_initialized() | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| DistanceSquared typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| edge_connects_flexsegmate() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| FlexbbNode(FlexbbInteractionGraph *owner, int node_id, int num_states) | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_adjacent_flexbb_node(int index) const | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_adjacent_flexbb_node(int index) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_adjacent_otfflexbb_node(int index) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_adjacent_otfflexbb_node(int index) | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_all_states(utility::vector1< Size > &rotlist, int offset) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_backbone_for_current_state() const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_bb_for_state(int state) const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| get_current_state() const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_flexbbig_owner() const | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_flexbbig_owner() | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_incident_flexbb_edge(int index) const | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_incident_flexbb_edge(int index) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| get_incident_otfflexbb_edge(int index) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_incident_otfflexbb_edge(int index) | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_num_distinct_backbones() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| get_num_states_for_aa_type_for_bb(int aa_type, int bb) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_num_states_for_bb(int bbconf) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_one_body_energy(int state) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_otfflexbbig_owner() const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_otfflexbbig_owner() | protocols::flexpack::interaction_graph::OTFFlexbbNode | inlineprotected |
| get_state_offset_for_bb(int bbconf) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| get_states_on_curr_bb(utility::vector1< Size > &state_list, int offset) const | protocols::flexpack::interaction_graph::FlexbbNode | |
| getNumStatesPerAAPerBB(int aa) | protocols::flexpack::interaction_graph::FlexbbNode | |
| have_edges_copy_alternate_to_current() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| have_edges_copy_alternate_to_current_following_flexbb_accept() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| inc_alternate_state_total_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| inc_curr_state_total_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| inform_edges_considered_fixedbb_substition_uncommitted() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| inform_edges_of_alt_state_before_bbjump() | protocols::flexpack::interaction_graph::FlexbbNode | |
| inform_incident_edges_about_partial_state_assignment() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| num_aa_types() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| num_bbconfs() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| num_states_for_aa_for_bb() | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| num_states_for_bb() | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| one_body_energies() const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| OTFFlexbbNode(OTFFlexbbInteractionGraph *, int node_id, int num_states) | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| PackerEnergy typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| parent typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| partial_state_assignment(int new_state) | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| prepare_for_simulated_annealing() | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| print() const | protocols::flexpack::interaction_graph::OTFFlexbbNode | virtual |
| print_internal_energies() | protocols::flexpack::interaction_graph::FlexbbNode | |
| Real typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| reset_all_rotamer_substitution_bookkeeping_data() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| Residue typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| ResidueCOP typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| rotamer(int index) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inline |
| rotamer_is_glycine(int state) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inline |
| rotamer_is_glycine_ | protocols::flexpack::interaction_graph::OTFFlexbbNode | private |
| rotamer_is_proline(int state) const | protocols::flexpack::interaction_graph::OTFFlexbbNode | inline |
| rotamer_is_proline_ | protocols::flexpack::interaction_graph::OTFFlexbbNode | private |
| rotamers_ | protocols::flexpack::interaction_graph::OTFFlexbbNode | private |
| set_alternate_state(int setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_alternate_state_one_body_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_alternate_state_total_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_alternate_state_two_body_energies(Size index, PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_amino_acid_types(utility::vector1< int > const &) | protocols::flexpack::interaction_graph::FlexbbNode | |
| set_closest_states_on_other_bbs(ObjexxFCL::FArray2D_int const &) | protocols::flexpack::interaction_graph::FlexbbNode | |
| set_considering_alternate_state() | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_curr_state_one_body_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_curr_state_total_energy(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_curr_state_two_body_energies(Size index, PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_current_state(int setting) | protocols::flexpack::interaction_graph::FlexbbNode | inlineprotected |
| set_num_distinct_backbones(int nbbconfs) | protocols::flexpack::interaction_graph::FlexbbNode | |
| set_num_states_per_backbone(utility::vector1< int > const &) | protocols::flexpack::interaction_graph::FlexbbNode | |
| set_rotamer(int state, ResidueCOP rotamer) | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| Size typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| state_has_same_backbone_as_current(int state) const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| state_info(int state) const | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| state_offsets_for_aa_for_bb() | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| state_offsets_for_bb() | protocols::flexpack::interaction_graph::FlexbbNode | inline |
| state_unassigned() const | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| update_internal_energy_sums() | protocols::flexpack::interaction_graph::FlexbbNode | |
| update_internal_vectors() | protocols::flexpack::interaction_graph::FlexbbNode | protected |
| update_one_body_energy(int state, PackerEnergy energy) | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| Vector typedef | protocols::flexpack::interaction_graph::OTFFlexbbNode | |
| write_current_state_to_state_array(ObjexxFCL::FArray1_int &nodes_states) | protocols::flexpack::interaction_graph::FlexbbNode | |
| zero_one_body_energies() | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| ~FlexbbNode() | protocols::flexpack::interaction_graph::FlexbbNode | virtual |
| ~OTFFlexbbNode() | protocols::flexpack::interaction_graph::OTFFlexbbNode | virtual |
1.8.7