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Rosetta Protocols
2014.35
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simply take a list of filters and combine them using the operation above More...
#include <OperatorFilter.hh>
Public Member Functions | |
Operator () | |
virtual | ~Operator () |
filters::FilterOP | clone () const |
filters::FilterOP | fresh_instance () const |
virtual bool | apply (core::pose::Pose const &pose) const |
Returns true if the given pose passes the filter, false otherwise. More... | |
virtual void | report (std::ostream &out, core::pose::Pose const &pose) const |
virtual core::Real | report_sm (core::pose::Pose const &pose) const |
used to report filter internals through a score or silent file More... | |
void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &filters, moves::Movers_map const &, core::pose::Pose const &) |
core::Real | compute (core::pose::Pose const &pose) const |
utility::vector1 < protocols::filters::FilterOP > | filters () const |
void | add_filter (protocols::filters::FilterOP f) |
void | reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint) |
core::Real | threshold () const |
goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply More... | |
void | threshold (core::Real const t) |
Operation | operation () const |
void | operation (Operation const o) |
void | negate (bool const b) |
bool | negate () const |
utility::vector1< std::string > | relative_pose_names () |
void | relative_pose_names (utility::vector1< std::string > const s) |
bool | multi_relative () const |
void | multi_relative (bool const m) |
void | modify_relative_filters_pdb_names () |
bool | logarithm () const |
void | logarithm (bool const b) |
void | report_subvalues (bool const report) |
bool | report_subvalues () const |
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Filter () | |
Filter (std::string const &) | |
Filter (Filter const &) | |
virtual | ~Filter () |
virtual std::string | get_type () const |
std::string | get_user_defined_name () const |
void | set_user_defined_name (std::string const &name) |
virtual void | clear () |
used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
virtual void | apply (core::io::serialization::PipeMap &pmap) |
virtual void | score (core::io::serialization::PipeMap &pmap) |
virtual core::Real | score (core::pose::Pose &pose) |
virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) |
virtual std::string | name () const |
Additional Inherited Members | |
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std::string | scorename_ |
simply take a list of filters and combine them using the operation above
protocols::simple_filters::Operator::Operator | ( | ) |
References filters, and filters_.
Referenced by clone(), and fresh_instance().
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void protocols::simple_filters::Operator::add_filter | ( | protocols::filters::FilterOP | f | ) |
References filters_.
Referenced by modify_relative_filters_pdb_names(), and parse_my_tag().
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Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), negate(), threshold(), and protocols::simple_filters::TR.
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Implements protocols::filters::Filter.
References Operator().
core::Real protocols::simple_filters::Operator::compute | ( | core::pose::Pose const & | pose | ) | const |
References protocols::simple_filters::ABS, protocols::simple_filters::BOOLEAN_OR, filters(), protocols::filters::Filter::get_type(), logarithm(), protocols::simple_filters::MAX, protocols::simple_filters::MIN, negate(), protocols::simple_filters::NORMALIZED_SUM, operation(), protocols::simple_filters::PRODUCT, report_sm(), runtime_assert, size(), protocols::simple_filters::SUBTRACT, protocols::simple_filters::SUM, protocols::simple_filters::TR, and protocols::simple_filters::XOR.
Referenced by apply(), report(), and report_sm().
utility::vector1< protocols::filters::FilterOP > protocols::simple_filters::Operator::filters | ( | ) | const |
References filters_.
Referenced by compute(), and reset_baseline().
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Implements protocols::filters::Filter.
References Operator().
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References logarithm_.
Referenced by compute(), and parse_my_tag().
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References protocols::match::upstream::b, and logarithm_.
void protocols::simple_filters::Operator::modify_relative_filters_pdb_names | ( | ) |
References add_filter(), filter, filters_, protocols::filters::Filter::get_type(), relative_pose_names_, runtime_assert, and protocols::simple_filters::TR.
Referenced by parse_my_tag().
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References multi_relative_.
Referenced by parse_my_tag().
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References multi_relative_.
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References protocols::match::upstream::b, and negate_.
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References negate_.
Referenced by apply(), compute(), and parse_my_tag().
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References operation_.
Referenced by compute(), and parse_my_tag().
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References operation_.
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Reimplemented from protocols::filters::Filter.
References protocols::simple_filters::ABS, add_filter(), protocols::simple_filters::BOOLEAN_OR, filters_, logarithm(), protocols::simple_filters::MAX, protocols::simple_filters::MIN, modify_relative_filters_pdb_names(), multi_relative(), negate(), protocols::simple_filters::NORMALIZED_SUM, operation(), protocols::rosetta_scripts::parse_filter(), protocols::simple_filters::PRODUCT, relative_pose_names_, report_subvalues(), utility::string_split(), protocols::simple_filters::SUBTRACT, protocols::simple_filters::SUM, threshold(), protocols::simple_filters::TR, utility_exit_with_message, and protocols::simple_filters::XOR.
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References relative_pose_names_.
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References relative_pose_names_.
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Reimplemented from protocols::filters::Filter.
References compute().
Referenced by report_subvalues().
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used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References protocols::jd2::Job::add_string_real_pair(), compute(), protocols::nonlocal::current_job(), filter, filters_, protocols::jd2::JobDistributor::get_instance(), protocols::filters::Filter::get_user_defined_name(), protocols::filters::Filter::report_sm(), report_subvalues(), and protocols::simple_filters::TR.
Referenced by compute().
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References report(), and report_subvalues_.
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References report_subvalues_.
Referenced by parse_my_tag(), and report_sm().
void protocols::simple_filters::Operator::reset_baseline | ( | core::pose::Pose const & | pose, |
bool const | attempt_read_from_checkpoint | ||
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goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply
References threshold_.
Referenced by apply(), and parse_my_tag().
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References threshold_.
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Referenced by add_filter(), filters(), modify_relative_filters_pdb_names(), Operator(), parse_my_tag(), and report_sm().
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Referenced by logarithm().
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Referenced by multi_relative().
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Referenced by operation().
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Referenced by modify_relative_filters_pdb_names(), parse_my_tag(), and relative_pose_names().
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Referenced by report_subvalues().
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Referenced by threshold().