Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::TotalSasaFilter Class Reference

#include <TotalSasaFilter.hh>

Public Member Functions

 TotalSasaFilter ()
 
 TotalSasaFilter (core::Real const lower_threshold, bool const hydrophobic=false, bool const polar=false, core::Real const upper_threshold=100000000.0, bool report_per_residue_sasa=false)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
core::pack::task::TaskFactoryOP task_factory ()
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 Set the task factory to limit SASA calculation to packable residues. More...
 
filters::FilterOP clone () const
 
filters::FilterOP fresh_instance () const
 
virtual ~TotalSasaFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

core::Real lower_threshold_
 
core::Real upper_threshold_
 
core::pack::task::TaskFactoryOP taskfactory_
 
bool hydrophobic_
 Residue subset definition. Only the surface area from packable residues. More...
 
bool polar_
 
bool report_per_residue_sasa_
 count only hydrophobics? polars? More...
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::TotalSasaFilter::TotalSasaFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::TotalSasaFilter::TotalSasaFilter ( core::Real const  lower_threshold,
bool const  hydrophobic = false,
bool const  polar = false,
core::Real const  upper_threshold = 100000000.0,
bool  report_per_residue_sasa = false 
)
protocols::simple_filters::TotalSasaFilter::~TotalSasaFilter ( )
virtual

Member Function Documentation

bool protocols::simple_filters::TotalSasaFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, sasa, protocols::simple_filters::TR, and upper_threshold_.

filters::FilterOP protocols::simple_filters::TotalSasaFilter::clone ( ) const
virtual
core::Real protocols::simple_filters::TotalSasaFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::TotalSasaFilter::fresh_instance ( ) const
virtual
void protocols::simple_filters::TotalSasaFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &   
)
virtual
void protocols::simple_filters::TotalSasaFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual
core::Real protocols::simple_filters::TotalSasaFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and sasa.

core::pack::task::TaskFactoryOP protocols::simple_filters::TotalSasaFilter::task_factory ( )

References taskfactory_.

Referenced by parse_my_tag(), and task_factory().

void protocols::simple_filters::TotalSasaFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

Set the task factory to limit SASA calculation to packable residues.

References task_factory(), and taskfactory_.

Member Data Documentation

bool protocols::simple_filters::TotalSasaFilter::hydrophobic_
private

Residue subset definition. Only the surface area from packable residues.

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::TotalSasaFilter::lower_threshold_
private

Referenced by apply(), parse_my_tag(), and report().

bool protocols::simple_filters::TotalSasaFilter::polar_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::TotalSasaFilter::report_per_residue_sasa_
private

count only hydrophobics? polars?

Referenced by compute(), parse_my_tag(), and report().

core::pack::task::TaskFactoryOP protocols::simple_filters::TotalSasaFilter::taskfactory_
private

Referenced by compute(), and task_factory().

core::Real protocols::simple_filters::TotalSasaFilter::upper_threshold_
private

Referenced by apply(), parse_my_tag(), and report().


The documentation for this class was generated from the following files: