StepWiseRNA_Minimizer.cc File Reference

Not particularly fancy, just minimizes a list of poses. More...

#include <protocols/stepwise/legacy/modeler/rna/StepWiseRNA_Minimizer.hh>
#include <protocols/stepwise/modeler/rna/StepWiseRNA_OutputData.hh>
#include <protocols/stepwise/modeler/options/StepWiseModelerOptions.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_BaseCentroidChecker.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_ChainClosableGeometryChecker.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.fwd.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh>
#include <protocols/stepwise/modeler/output_util.hh>
#include <protocols/stepwise/modeler/movemap/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/simple_moves/ConstrainToIdealMover.hh>
#include <core/types.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rna/RNA_TorsionPotential.hh>
#include <core/chemical/rna/util.hh>
#include <basic/Tracer.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/id/TorsionID.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/util.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Conformation.hh>
#include <protocols/farna/RNA_LoopCloser.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <numeric/random/random.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <utility/exit.hh>
#include <utility/file/file_sys_util.hh>
#include <time.h>
#include <fstream>
#include <iostream>
#include <sstream>
#include <map>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::legacy
	protocols::stepwise::legacy::modeler
	protocols::stepwise::legacy::modeler::rna

Variables
static numeric::random::RandomGenerator	RG (3892128)
static basic::Tracer	TR ("protocols.stepwise.legacy.modeler.rna.StepWiseRNA_Minimizer")

Detailed Description

Not particularly fancy, just minimizes a list of poses.

Detailed:

Author

Parin Sripakdeevong (sripa.nosp@m.kpa@.nosp@m.stanf.nosp@m.ord..nosp@m.edu), Rhiju Das (rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu)

Variable Documentation

numeric::random::RandomGenerator RG(3892128)

static

basic::Tracer TR("protocols.stepwise.legacy.modeler.rna.StepWiseRNA_Minimizer")

static