Rosetta Protocols  2014.35
protocols::abinitio::FragmentSampler Member List

This is the complete list of members for protocols::abinitio::FragmentSampler, including all inherited members.

apply(core::pose::Pose &pose)protocols::abinitio::FragmentSamplervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
apply_large_frags_protocols::abinitio::FragmentSamplerprivate
BaseClass typedefprotocols::abinitio::FragmentSamplerprivate
bQuickTest() const protocols::abinitio::FragmentSamplerinline
bQuickTest_protocols::abinitio::FragmentSamplerprivate
check_loops(core::pose::Pose &pose)protocols::abinitio::FragmentSampler
checkpointed_cycle_block(core::pose::Pose &, StageID, void(FragmentSampler::*cycles)(core::pose::Pose &))protocols::abinitio::FragmentSamplerprivate
checkpoints_protocols::abinitio::FragmentSamplerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::abinitio::FragmentSamplervirtual
create()protocols::moves::Movervirtual
current_scorefxn() const protocols::abinitio::FragmentSampler
current_scorefxn(core::scoring::ScoreFunction const &scorefxn)protocols::abinitio::FragmentSamplerprotected
do_stage1_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
do_stage2_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
do_stage3_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
do_stage4_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
Filters_map typedefprotocols::moves::Mover
FragmentSampler(topology_broker::TopologyBrokerOP broker)protocols::abinitio::FragmentSampler
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_checkpoints()protocols::abinitio::FragmentSamplerinlinevirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::abinitio::FragmentSamplervirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
id2proftag(StageID id)protocols::abinitio::FragmentSamplerinlineprivate
id2proftag_protocols::abinitio::FragmentSamplerprivatestatic
id2string(StageID id)protocols::abinitio::FragmentSamplerinlineprivate
id2string_protocols::abinitio::FragmentSamplerprivatestatic
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
just_smooth_cycles() const protocols::abinitio::FragmentSamplerinline
just_smooth_cycles_protocols::abinitio::FragmentSamplerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
mc()protocols::abinitio::FragmentSamplerinlineprotected
mc() const protocols::abinitio::FragmentSamplerinlineprotected
mc_protocols::abinitio::FragmentSamplerprivate
mc_ptr()protocols::abinitio::FragmentSamplerinlineprotected
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
mover(core::pose::Pose const &pose, StageID stage_id, core::scoring::ScoreFunction const &scorefxn, core::Real progress=1.0)protocols::abinitio::FragmentSamplerprotectedvirtual
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
Parent typedefprotocols::abinitio::FragmentSamplerprivate
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
prepare_loop_in_stage3(core::pose::Pose &, Size, Size)protocols::abinitio::FragmentSamplerprotectedvirtual
prepare_loop_in_stage4(core::pose::Pose &, Size, Size)protocols::abinitio::FragmentSamplerprotectedvirtual
prepare_stage1(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
prepare_stage2(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
prepare_stage3(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
prepare_stage4(core::pose::Pose &pose)protocols::abinitio::FragmentSamplerprotectedvirtual
recover_low(core::pose::Pose &pose, StageID stage)protocols::abinitio::FragmentSamplerprotected
recover_low_stages_protocols::abinitio::FragmentSamplerprivate
register_options()protocols::abinitio::FragmentSamplerstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
replace_scorefxn(core::pose::Pose &pose, StageID stage, core::Real intra_stage_progress)protocols::abinitio::FragmentSamplerprotectedvirtual
reset_status()protocols::moves::Mover
save_state(SerializableState &state)protocols::moves::Movervirtual
score_stage1_protocols::abinitio::FragmentSamplerprivate
score_stage2_protocols::abinitio::FragmentSamplerprivate
score_stage3a_protocols::abinitio::FragmentSamplerprivate
score_stage3b_protocols::abinitio::FragmentSamplerprivate
score_stage4_protocols::abinitio::FragmentSamplerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_current_weight(core::scoring::ScoreType type, core::Real setting)protocols::abinitio::FragmentSamplerprotected
set_cycles(core::Real increase_cycles=1.0)protocols::abinitio::FragmentSamplervirtual
set_default_mc(core::scoring::ScoreFunction const &scorefxn)protocols::abinitio::FragmentSamplerprivate
set_default_options()protocols::abinitio::FragmentSamplerprivate
set_default_scores()protocols::abinitio::FragmentSamplerprivate
set_defaults()protocols::abinitio::FragmentSamplerprotected
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_mc(moves::MonteCarloOP)protocols::abinitio::FragmentSamplerprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_score_weight(core::scoring::ScoreType, core::Real setting, StageID stage=ALL_STAGES)protocols::abinitio::FragmentSamplervirtual
set_stage4_cycles(core::Size stage4_cycles_new)protocols::abinitio::FragmentSamplerinline
set_type(std::string const &setting)protocols::moves::Moverinline
short_insert_region_protocols::abinitio::FragmentSamplerprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
skip_stages_protocols::abinitio::FragmentSamplerprivate
stage1_cycles() const protocols::abinitio::FragmentSamplerinline
stage1_cycles_protocols::abinitio::FragmentSamplerprotected
stage2_cycles() const protocols::abinitio::FragmentSamplerinline
stage2_cycles_protocols::abinitio::FragmentSamplerprotected
stage3_cycles() const protocols::abinitio::FragmentSamplerinline
stage3_cycles_protocols::abinitio::FragmentSamplerprotected
stage4_cycles() const protocols::abinitio::FragmentSamplerinline
stage4_cycles_protocols::abinitio::FragmentSamplerprotected
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
temperature_protocols::abinitio::FragmentSamplerprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
topology_broker(topology_broker::TopologyBrokerOP set)protocols::abinitio::FragmentSampler
topology_broker()protocols::abinitio::FragmentSamplerprotected
topology_broker_protocols::abinitio::FragmentSamplerprivate
total_trials_protocols::abinitio::FragmentSamplerprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~FragmentSampler()protocols::abinitio::FragmentSamplervirtual
~Mover()protocols::moves::Movervirtual