Rosetta Protocols  2014.35
protocols::frag_picker::scores::PartialSecondarySimilarity Member List

This is the complete list of members for protocols::frag_picker::scores::PartialSecondarySimilarity, including all inherited members.

cached_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map)protocols::frag_picker::scores::PartialSecondarySimilarityvirtual
cached_scores_id_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::CachingScoringMethodinline
clean_up()protocols::frag_picker::scores::PartialSecondarySimilarityinlinevirtual
do_caching(VallChunkOP)protocols::frag_picker::scores::PartialSecondarySimilarityvirtual
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::FragmentScoringMethodinline
get_id()protocols::frag_picker::scores::FragmentScoringMethodinline
get_min_allowed_score()protocols::frag_picker::scores::FragmentScoringMethodinline
get_prediction_name()protocols::frag_picker::scores::PartialSecondarySimilarityinline
get_priority()protocols::frag_picker::scores::FragmentScoringMethodinline
get_score_name()protocols::frag_picker::scores::FragmentScoringMethodinline
get_use_lowest()protocols::frag_picker::scores::FragmentScoringMethodinline
id_protocols::frag_picker::scores::FragmentScoringMethodprotected
lowest_acceptable_value_protocols::frag_picker::scores::FragmentScoringMethodprotected
name_protocols::frag_picker::scores::FragmentScoringMethodprotected
norm_query_E_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
norm_query_H_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
norm_query_L_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
PartialSecondarySimilarity(Size priority, Real lowest_acceptable_value, bool use_lowest, core::fragment::SecondaryStructureOP query_prediction, std::string prediction_name, Size sequence_length, Size longest_vall_chunk)protocols::frag_picker::scores::PartialSecondarySimilarity
prediction_name_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
priority_protocols::frag_picker::scores::FragmentScoringMethodprotected
query_len_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
raw_probs_protocols::frag_picker::scores::PartialSecondarySimilarityprivate
score(FragmentCandidateOP, FragmentScoreMapOP)protocols::frag_picker::scores::PartialSecondarySimilarityvirtual
scores_protocols::frag_picker::scores::PartialSecondarySimilarityprotected
set_id(Size id)protocols::frag_picker::scores::FragmentScoringMethodinline
set_min_allowed_score(Real lowest_acceptable_value)protocols::frag_picker::scores::FragmentScoringMethodinline
use_lowest_protocols::frag_picker::scores::FragmentScoringMethodprotected
~PartialSecondarySimilarity()protocols::frag_picker::scores::PartialSecondarySimilarityinline