protocols::farna::RNA_JumpLibrary Class Reference

#include <RNA_JumpLibrary.hh>

Public Member Functions
virtual	~RNA_JumpLibrary ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	RNA_JumpLibrary (std::string const filename)
void	read_jumps_from_file (std::string const &jump_library_filename)
void	check_forward_backward (std::string &atom_name, bool const forward, core::kinematics::Jump &j, RNA_PairingTemplateOP const &t) const
core::kinematics::Jump	get_random_base_pair_jump (char const aa1, char const aa2, char const edge1, char const edge2, char const orientation, std::string &atom_name1, std::string &atom_name2, bool &success, bool const forward1=true, bool const forward2=true) const

Private Member Functions
void	save_in_jump_library (core::Size const reschar1, core::Size const reschar2, char const edgechar1, char const edgechar2, char const orientation, std::string const &atom_name1, std::string const &atom_name2, core::kinematics::Jump const &jump1, core::kinematics::Jump const &jump2)

Private Attributes
RNA_PairingTemplateMap	rna_pairing_template_map_

Constructor & Destructor Documentation

protocols::farna::RNA_JumpLibrary::~RNA_JumpLibrary ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

protocols::farna::RNA_JumpLibrary::RNA_JumpLibrary ( std::string const  filename )

inline

References read_jumps_from_file().

Member Function Documentation

void protocols::farna::RNA_JumpLibrary::check_forward_backward	(	std::string &	atom_name,
		bool const	forward,
		core::kinematics::Jump &	j,
		RNA_PairingTemplateOP const &	t
	)		const

core::kinematics::Jump protocols::farna::RNA_JumpLibrary::get_random_base_pair_jump	(	char const	aa1,
		char const	aa2,
		char const	edge1,
		char const	edge2,
		char const	orientation,
		std::string &	atom_name1,
		std::string &	atom_name2,
		bool &	success,
		bool const	forward1 = true,
		bool const	forward2 = true
	)		const

References key, protocols::farna::RG, rna_pairing_template_map_, runtime_assert, templates, and numeric::random::RandomGenerator::uniform().

void protocols::farna::RNA_JumpLibrary::read_jumps_from_file

(

std::string const &

jump_library_filename

)

References utility::io::izstream::fail(), filename(), getline(), core::kinematics::Jump::reverse(), save_in_jump_library(), tag, protocols::farna::tr, and utility_exit_with_message.

Referenced by RNA_JumpLibrary().

void protocols::farna::RNA_JumpLibrary::save_in_jump_library ( core::Size const  reschar1, core::Size const  reschar2, char const  edgechar1, char const  edgechar2, char const  orientation, std::string const &  atom_name1, std::string const &  atom_name2, core::kinematics::Jump const &  jump1, core::kinematics::Jump const &  jump2  )

private

References rna_pairing_template_map_.

Referenced by read_jumps_from_file().

Member Data Documentation

RNA_PairingTemplateMap protocols::farna::RNA_JumpLibrary::rna_pairing_template_map_

private

Referenced by get_random_base_pair_jump(), and save_in_jump_library().

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The documentation for this class was generated from the following files:

• src/protocols/farna/RNA_JumpLibrary.hh
• src/protocols/farna/RNA_JumpLibrary.cc