Rosetta Protocols  2014.35
Public Types | Public Member Functions | Static Private Member Functions | Private Attributes | Static Private Attributes | List of all members
protocols::frag_picker::VallResidue Class Reference

class for managing a line of the Vall fragment library More...

#include <VallResidue.hh>

Public Types

typedef core::Size Size
 
typedef core::Real Real
 
typedef std::string String
 
typedef
core::fragment::BBTorsionSRFD 
BBTorsionSRFD
 
typedef
core::fragment::BBTorsionSRFDOP 
BBTorsionSRFDOP
 

Public Member Functions

 VallResidue ()
 default constructor More...
 
 VallResidue (String const &line)
 string constructor More...
 
 VallResidue (VallResidue const &rval)
 copy constructor More...
 
virtual ~VallResidue ()
 default destructor More...
 
VallResidueoperator= (VallResidue const &rval)
 copy assignment More...
 
BBTorsionSRFDOP bbtorsion_srfd () const
 build a BBTorsionSRFD from this page More...
 
String const & id () const
 id of fragment source (e.g. pdb name) More...
 
void key (Size key)
 sets the key id More...
 
Size key ()
 sets the key id More...
 
char aa () const
 one letter amino acid code More...
 
char ss () const
 one letter secondary structure code More...
 
char ss_str () const
 one letter secondary structure STR code More...
 
Size resi () const
 residue sequence number in source More...
 
Real x () const
 x-coordinate of C-alpha More...
 
Real y () const
 y-coordinate of C-alpha More...
 
Real z () const
 z-coordinate of C-alpha More...
 
Real cbx () const
 x-coordinate of C-beta More...
 
Real cby () const
 y-coordinate of C-beta More...
 
Real cbz () const
 z-coordinate of C-beta More...
 
Real cenx () const
 x-coordinate of centroid More...
 
Real ceny () const
 y-coordinate of centroid More...
 
Real cenz () const
 z-coordinate of centroid More...
 
Real sa () const
 solvent accessible area More...
 
Real sa_norm () const
 solvent accessible area normalized More...
 
Real dssp_phi () const
 phi backbone torsion in degrees from DSSP More...
 
Real dssp_psi () const
 psi backbone torsion in degrees from DSSP More...
 
Real depth () const
 all-atom residue depth More...
 
Size nali () const
 number of alignments More...
 
Real phi () const
 phi backbone torsion in degrees More...
 
Real psi () const
 psi backbone torsion in degrees More...
 
Real omega () const
 omega backbone torsion in degrees More...
 
Real bF () const
 b factor average for backbone More...
 
utility::vector1< Real > const & profile () const
 per amino acid profile data More...
 
utility::vector1< Real > const & profile_struct () const
 per amino acid structure profile data More...
 
utility::vector1< Real > const & secondary_shifts ()
 secondary chemical shifts More...
 
void profile (utility::vector1< Real > const &v)
 per amino acid profile data More...
 
void profile_struct (utility::vector1< Real > const &v)
 per amino acid structure profile data More...
 
Size position_index () const
 stores the 1-based indexing for accessing this residue via VallSection::operator [] More...
 
Size section_index () const
 stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator [] More...
 
void id (String const &s)
 id of fragment source (e.g. pdb name) More...
 
void aa (char const c)
 one letter amino acid code More...
 
void ss (char const c)
 one letter secondary structure code More...
 
void ss_str (char const c)
 one letter secondary structure STR code More...
 
void set_ss_from_str ()
 
void resi (Size const i)
 residue sequence number in source More...
 
void x (Real const val)
 x-coordinate of C-alpha More...
 
void y (Real const val)
 y-coordinate of C-alpha More...
 
void z (Real const val)
 z-coordinate of C-alpha More...
 
void cbx (Real const val)
 x-coordinate of C-beta More...
 
void cby (Real const val)
 y-coordinate of C-beta More...
 
void cbz (Real const val)
 z-coordinate of C-beta More...
 
void cenx (Real const val)
 x-coordinate of centroid More...
 
void ceny (Real const val)
 y-coordinate of centroid More...
 
void cenz (Real const val)
 z-coordinate of centroid More...
 
void sa (Real const val)
 solvent accessible area More...
 
void nali (Size const val)
 number of alignments More...
 
void depth (Real const depth)
 all-atom residue depth More...
 
void phi (Real const val)
 phi backbone torsion in degrees More...
 
void psi (Real const val)
 psi backbone torsion in degrees More...
 
void omega (Real const val)
 omega backbone torsion in degrees More...
 
void bF (Real const val)
 b factor average for backbone More...
 
void position_index (Size const idx)
 stores the 1-based indexing for accessing this residue via VallSection::operator [] More...
 
void section_index (Size const idx)
 stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator [] More...
 
bool has_profile () const
 has profile info? More...
 
bool has_profile_struct () const
 has structure profile info? More...
 
bool has_chemical_shifts () const
 
void fill_from_string (String const &line)
 fill internal data from string More...
 
void fill_from_string_cs (String const &line)
 fill internal data from string More...
 
void fill_from_string_version1 (String const &line)
 fill internal data from string More...
 
void fill_from_string_residue_depth_version1 (String const &line)
 
Real distance_squared (VallResidueCOP r)
 
Real distance_squared_cb (VallResidueCOP r)
 
Real distance_squared_cen (VallResidueCOP r)
 
Real distance_squared (VallResidueCOP r, ContactType const &type)
 

Static Private Member Functions

static utility::vector1
< core::chemical::AA
order_vector ()
 return a vector specifying the order of profile data in Vall More...
 
static String format_string ()
 return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size More...
 
static String format_string_cs ()
 return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size More...
 
static String format_string_version1 ()
 return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size More...
 
static String format_string_residue_depth_version1 ()
 

Private Attributes

Size key_
 integer key for a residue is simply the line number in a vall file More...
 
String id_
 id of fragment source (e.g. pdb name) More...
 
char aa_
 one letter amino acid code More...
 
char ss_
 one letter secondary structure code (3 letter alphabet) More...
 
char ss_str_
 one letter secondary structure code (STR alphabet - Karplus et. al.) More...
 
Size resi_
 residue sequence number in source More...
 
Real bF_
 b factor average for backbone More...
 
Real x_
 x-coordinate of C-alpha More...
 
Real y_
 y-coordinate of C-alpha More...
 
Real z_
 z-coordinate of C-alpha More...
 
Real cbx_
 x-coordinate of C-beta More...
 
Real cby_
 y-coordinate of C-beta More...
 
Real cbz_
 z-coordinate of C-beta More...
 
Real cenx_
 x-coordinate of centroid More...
 
Real ceny_
 y-coordinate of centroid More...
 
Real cenz_
 z-coordinate of centroid More...
 
Real phi_
 phi backbone torsion in degrees More...
 
Real psi_
 psi backbone torsion in degrees More...
 
Real omega_
 omega backbone torsion in degrees More...
 
Real sa_
 solvent accessible area More...
 
Real sa_norm_
 normalized solvent accessible area More...
 
Real dssp_phi_
 phi backbone torsion in degrees from DSSP program More...
 
Real dssp_psi_
 psi backbone torsion in degrees from DSSP program More...
 
Size nali_
 number of alignments used for profile More...
 
utility::vector1< Realprofile_
 per amino acid profile data More...
 
utility::vector1< Realprofile_struct_
 per amino acid structure profile data More...
 
utility::vector1< Realsec_shift_data_
 
Size position_index_
 stores the 1-based indexing for accessing this residue via VallSection::operator [] More...
 
Size section_index_
 stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator [] More...
 
Real all_atom_residue_depth_
 

Static Private Attributes

static utility::vector1
< core::chemical::AA
order_ = order_vector()
 order of amino acid profile data in Vall More...
 

Detailed Description

class for managing a line of the Vall fragment library

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::frag_picker::VallResidue::VallResidue ( )

default constructor

protocols::frag_picker::VallResidue::VallResidue ( String const &  line)
protocols::frag_picker::VallResidue::VallResidue ( VallResidue const &  rval)

copy constructor

protocols::frag_picker::VallResidue::~VallResidue ( )
virtual

default destructor

Member Function Documentation

char protocols::frag_picker::VallResidue::aa ( ) const
inline

one letter amino acid code

References aa_.

void protocols::frag_picker::VallResidue::aa ( char const  c)
inline

one letter amino acid code

References aa_.

VallResidue::BBTorsionSRFDOP protocols::frag_picker::VallResidue::bbtorsion_srfd ( ) const

build a BBTorsionSRFD from this page

References aa_, omega_, phi_, psi_, ss_, x_, y_, and z_.

Real protocols::frag_picker::VallResidue::bF ( ) const
inline

b factor average for backbone

References bF_.

void protocols::frag_picker::VallResidue::bF ( Real const  val)
inline

b factor average for backbone

References bF_.

Real protocols::frag_picker::VallResidue::cbx ( ) const
inline

x-coordinate of C-beta

References cbx_.

void protocols::frag_picker::VallResidue::cbx ( Real const  val)
inline

x-coordinate of C-beta

References cbx_.

Real protocols::frag_picker::VallResidue::cby ( ) const
inline

y-coordinate of C-beta

References cby_.

void protocols::frag_picker::VallResidue::cby ( Real const  val)
inline

y-coordinate of C-beta

References cby_.

Real protocols::frag_picker::VallResidue::cbz ( ) const
inline

z-coordinate of C-beta

References cbz_.

void protocols::frag_picker::VallResidue::cbz ( Real const  val)
inline

z-coordinate of C-beta

References cbz_.

Real protocols::frag_picker::VallResidue::cenx ( ) const
inline

x-coordinate of centroid

References cenx_.

void protocols::frag_picker::VallResidue::cenx ( Real const  val)
inline

x-coordinate of centroid

References cenx_.

Real protocols::frag_picker::VallResidue::ceny ( ) const
inline

y-coordinate of centroid

References ceny_.

void protocols::frag_picker::VallResidue::ceny ( Real const  val)
inline

y-coordinate of centroid

References ceny_.

Real protocols::frag_picker::VallResidue::cenz ( ) const
inline

z-coordinate of centroid

References cenz_.

void protocols::frag_picker::VallResidue::cenz ( Real const  val)
inline

z-coordinate of centroid

References cenz_.

Real protocols::frag_picker::VallResidue::depth ( ) const
inline

all-atom residue depth

References all_atom_residue_depth_.

Referenced by depth().

void protocols::frag_picker::VallResidue::depth ( Real const  depth)
inline

all-atom residue depth

References all_atom_residue_depth_, and depth().

core::Real protocols::frag_picker::VallResidue::distance_squared ( VallResidueCOP  r)

References x(), x_, y(), y_, z(), and z_.

Referenced by distance_squared(), and distance_squared_cb().

core::Real protocols::frag_picker::VallResidue::distance_squared ( VallResidueCOP  r,
ContactType const &  type 
)
core::Real protocols::frag_picker::VallResidue::distance_squared_cb ( VallResidueCOP  r)

References aa_, cbx_, cby_, cbz_, distance_squared(), x(), x_, y(), y_, z(), and z_.

Referenced by distance_squared().

core::Real protocols::frag_picker::VallResidue::distance_squared_cen ( VallResidueCOP  r)

References cenx_, ceny_, cenz_, x(), y(), and z().

Referenced by distance_squared().

Real protocols::frag_picker::VallResidue::dssp_phi ( ) const
inline

phi backbone torsion in degrees from DSSP

References dssp_phi_.

Real protocols::frag_picker::VallResidue::dssp_psi ( ) const
inline

psi backbone torsion in degrees from DSSP

References dssp_psi_.

void protocols::frag_picker::VallResidue::fill_from_string ( String const &  line)

fill internal data from string

Values are delimited by whitespace. Ordering is: id aa ss resi dummy dummy x y z phi psi omega dummy dummy dummy dummy (aa profile_info, 20 columns) BFactor

References aa_, format_string(), id(), id_, omega_, order_, phi_, profile_, psi_, resi_, ss_, ss_str_, x_, y_, and z_.

Referenced by VallResidue().

void protocols::frag_picker::VallResidue::fill_from_string_cs ( String const &  line)

fill internal data from string

Values are delimited by whitespace. Ordering is: id aa ss resi dummy dummy x y z phi psi omega dummy dummy dummy dummy (aa profile_info, 20 columns) (CS data, 12 columns)

References aa_, bF_, format_string_cs(), id(), id_, omega_, order_, phi_, profile_, psi_, resi_, sec_shift_data_, ss_, ss_str_, x_, y_, and z_.

Referenced by VallResidue().

void protocols::frag_picker::VallResidue::fill_from_string_residue_depth_version1 ( String const &  line)
void protocols::frag_picker::VallResidue::fill_from_string_version1 ( String const &  line)

fill internal data from string

Values are delimited by whitespace. Ordering is: id aa ss resi dummy dummy x y z cbz cby cbz cenx ceny cenz phi psi omega dssp_phi dssp_psi sa nali (aa profile_info, 20 columns) BFactor

References aa_, bF_, cbx_, cby_, cbz_, cenx_, ceny_, cenz_, dssp_phi_, dssp_psi_, format_string_version1(), id(), id_, nali_, omega_, order_, phi_, profile_, profile_struct_, psi_, resi_, sa_, protocols::frag_picker::sa_faraggi_max(), sa_norm_, set_ss_from_str(), ss_str_, x_, y_, and z_.

Referenced by VallResidue().

VallResidue::String protocols::frag_picker::VallResidue::format_string ( )
staticprivate

return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size

Remarks
This is necessary for sscanf; wrong type can give wrong input.

References s, and protocols::frag_picker::TR.

Referenced by fill_from_string().

VallResidue::String protocols::frag_picker::VallResidue::format_string_cs ( )
staticprivate

return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size

Remarks
This is necessary for sscanf; wrong type can give wrong input.

References s, and protocols::frag_picker::TR.

Referenced by fill_from_string_cs().

VallResidue::String protocols::frag_picker::VallResidue::format_string_residue_depth_version1 ( )
staticprivate
VallResidue::String protocols::frag_picker::VallResidue::format_string_version1 ( )
staticprivate

return a formatting string for fill_from_string() dependent upon actual type of core::Real and core::Size

return a formatting string for fill_from_string_version1() dependent upon actual type of core::Real and core::Size

Remarks
This is necessary for sscanf; wrong type can give wrong input.

References s, and protocols::frag_picker::TR.

Referenced by fill_from_string_version1().

bool protocols::frag_picker::VallResidue::has_chemical_shifts ( ) const
inline

References sec_shift_data_.

bool protocols::frag_picker::VallResidue::has_profile ( ) const
inline

has profile info?

References profile_.

bool protocols::frag_picker::VallResidue::has_profile_struct ( ) const
inline

has structure profile info?

References profile_struct_.

String const& protocols::frag_picker::VallResidue::id ( ) const
inline

id of fragment source (e.g. pdb name)

References id_.

Referenced by fill_from_string(), fill_from_string_cs(), fill_from_string_residue_depth_version1(), and fill_from_string_version1().

void protocols::frag_picker::VallResidue::id ( String const &  s)
inline

id of fragment source (e.g. pdb name)

References id_.

void protocols::frag_picker::VallResidue::key ( Size  key)
inline

sets the key id

References key(), and key_.

Referenced by key().

Size protocols::frag_picker::VallResidue::key ( )
inline

sets the key id

References key_.

Size protocols::frag_picker::VallResidue::nali ( ) const
inline

number of alignments

References nali_.

void protocols::frag_picker::VallResidue::nali ( Size const  val)
inline

number of alignments

References nali_.

Real protocols::frag_picker::VallResidue::omega ( ) const
inline

omega backbone torsion in degrees

References omega_.

void protocols::frag_picker::VallResidue::omega ( Real const  val)
inline

omega backbone torsion in degrees

References omega_.

VallResidue & protocols::frag_picker::VallResidue::operator= ( VallResidue const &  rval)
utility::vector1< core::chemical::AA > protocols::frag_picker::VallResidue::order_vector ( )
staticprivate

return a vector specifying the order of profile data in Vall

References core::chemical::aa_from_oneletter_code(), and protocols::forge::methods::order().

Real protocols::frag_picker::VallResidue::phi ( ) const
inline

phi backbone torsion in degrees

References phi_.

void protocols::frag_picker::VallResidue::phi ( Real const  val)
inline

phi backbone torsion in degrees

References phi_.

Size protocols::frag_picker::VallResidue::position_index ( ) const
inline

stores the 1-based indexing for accessing this residue via VallSection::operator []

References position_index_.

void protocols::frag_picker::VallResidue::position_index ( Size const  idx)
inline

stores the 1-based indexing for accessing this residue via VallSection::operator []

References position_index_.

utility::vector1<Real> const& protocols::frag_picker::VallResidue::profile ( ) const
inline

per amino acid profile data

References profile_.

void protocols::frag_picker::VallResidue::profile ( utility::vector1< Real > const &  v)
inline

per amino acid profile data

References profile_.

utility::vector1<Real> const& protocols::frag_picker::VallResidue::profile_struct ( ) const
inline

per amino acid structure profile data

References profile_struct_.

void protocols::frag_picker::VallResidue::profile_struct ( utility::vector1< Real > const &  v)
inline

per amino acid structure profile data

References profile_struct_.

Real protocols::frag_picker::VallResidue::psi ( ) const
inline

psi backbone torsion in degrees

References psi_.

void protocols::frag_picker::VallResidue::psi ( Real const  val)
inline

psi backbone torsion in degrees

References psi_.

Size protocols::frag_picker::VallResidue::resi ( ) const
inline

residue sequence number in source

References resi_.

void protocols::frag_picker::VallResidue::resi ( Size const  i)
inline

residue sequence number in source

References resi_.

Real protocols::frag_picker::VallResidue::sa ( ) const
inline

solvent accessible area

References sa_.

void protocols::frag_picker::VallResidue::sa ( Real const  val)
inline

solvent accessible area

References sa_.

Real protocols::frag_picker::VallResidue::sa_norm ( ) const
inline

solvent accessible area normalized

References sa_norm_.

utility::vector1<Real> const& protocols::frag_picker::VallResidue::secondary_shifts ( )
inline

secondary chemical shifts

References sec_shift_data_.

Size protocols::frag_picker::VallResidue::section_index ( ) const
inline

stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator []

References section_index_.

void protocols::frag_picker::VallResidue::section_index ( Size const  idx)
inline

stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator []

References section_index_.

void protocols::frag_picker::VallResidue::set_ss_from_str ( )
inline

References ss_, and ss_str_.

Referenced by fill_from_string_version1().

char protocols::frag_picker::VallResidue::ss ( ) const
inline

one letter secondary structure code

References ss_.

void protocols::frag_picker::VallResidue::ss ( char const  c)
inline

one letter secondary structure code

References ss_.

char protocols::frag_picker::VallResidue::ss_str ( ) const
inline

one letter secondary structure STR code

References ss_str_.

void protocols::frag_picker::VallResidue::ss_str ( char const  c)
inline

one letter secondary structure STR code

References ss_str_.

Real protocols::frag_picker::VallResidue::x ( ) const
inline

x-coordinate of C-alpha

References x_.

Referenced by distance_squared(), distance_squared_cb(), and distance_squared_cen().

void protocols::frag_picker::VallResidue::x ( Real const  val)
inline

x-coordinate of C-alpha

References x_.

Real protocols::frag_picker::VallResidue::y ( ) const
inline

y-coordinate of C-alpha

References y_.

Referenced by distance_squared(), distance_squared_cb(), and distance_squared_cen().

void protocols::frag_picker::VallResidue::y ( Real const  val)
inline

y-coordinate of C-alpha

References y_.

Real protocols::frag_picker::VallResidue::z ( ) const
inline

z-coordinate of C-alpha

References z_.

Referenced by distance_squared(), distance_squared_cb(), and distance_squared_cen().

void protocols::frag_picker::VallResidue::z ( Real const  val)
inline

z-coordinate of C-alpha

References z_.

Member Data Documentation

char protocols::frag_picker::VallResidue::aa_
private
Real protocols::frag_picker::VallResidue::all_atom_residue_depth_
private
Real protocols::frag_picker::VallResidue::bF_
private

b factor average for backbone

Referenced by bF(), fill_from_string_cs(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::cbx_
private

x-coordinate of C-beta

Referenced by cbx(), distance_squared_cb(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::cby_
private

y-coordinate of C-beta

Referenced by cby(), distance_squared_cb(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::cbz_
private

z-coordinate of C-beta

Referenced by cbz(), distance_squared_cb(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::cenx_
private

x-coordinate of centroid

Referenced by cenx(), distance_squared_cen(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::ceny_
private

y-coordinate of centroid

Referenced by ceny(), distance_squared_cen(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::cenz_
private

z-coordinate of centroid

Referenced by cenz(), distance_squared_cen(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::dssp_phi_
private

phi backbone torsion in degrees from DSSP program

Referenced by dssp_phi(), fill_from_string_version1(), and operator=().

Real protocols::frag_picker::VallResidue::dssp_psi_
private

psi backbone torsion in degrees from DSSP program

Referenced by dssp_psi(), fill_from_string_version1(), and operator=().

String protocols::frag_picker::VallResidue::id_
private
Size protocols::frag_picker::VallResidue::key_
private

integer key for a residue is simply the line number in a vall file

Referenced by key().

Size protocols::frag_picker::VallResidue::nali_
private

number of alignments used for profile

Referenced by fill_from_string_version1(), nali(), and operator=().

Real protocols::frag_picker::VallResidue::omega_
private
utility::vector1< core::chemical::AA > protocols::frag_picker::VallResidue::order_ = order_vector()
staticprivate

order of amino acid profile data in Vall

Referenced by fill_from_string(), fill_from_string_cs(), and fill_from_string_version1().

Real protocols::frag_picker::VallResidue::phi_
private
Size protocols::frag_picker::VallResidue::position_index_
private

stores the 1-based indexing for accessing this residue via VallSection::operator []

Referenced by operator=(), and position_index().

utility::vector1<Real> protocols::frag_picker::VallResidue::profile_
private
utility::vector1<Real> protocols::frag_picker::VallResidue::profile_struct_
private

per amino acid structure profile data

Referenced by fill_from_string_version1(), has_profile_struct(), operator=(), and profile_struct().

Real protocols::frag_picker::VallResidue::psi_
private
Size protocols::frag_picker::VallResidue::resi_
private
Real protocols::frag_picker::VallResidue::sa_
private

solvent accessible area

Referenced by fill_from_string_version1(), operator=(), and sa().

Real protocols::frag_picker::VallResidue::sa_norm_
private

normalized solvent accessible area

Referenced by fill_from_string_version1(), operator=(), and sa_norm().

utility::vector1<Real> protocols::frag_picker::VallResidue::sec_shift_data_
private
Size protocols::frag_picker::VallResidue::section_index_
private

stores the 1-based indexing for accessing the VallSection this residue is located in via VallLibrary::operator []

Referenced by operator=(), and section_index().

char protocols::frag_picker::VallResidue::ss_
private

one letter secondary structure code (3 letter alphabet)

Referenced by bbtorsion_srfd(), fill_from_string(), fill_from_string_cs(), fill_from_string_residue_depth_version1(), operator=(), set_ss_from_str(), and ss().

char protocols::frag_picker::VallResidue::ss_str_
private

one letter secondary structure code (STR alphabet - Karplus et. al.)

Referenced by fill_from_string(), fill_from_string_cs(), fill_from_string_residue_depth_version1(), fill_from_string_version1(), operator=(), set_ss_from_str(), and ss_str().

Real protocols::frag_picker::VallResidue::x_
private
Real protocols::frag_picker::VallResidue::y_
private
Real protocols::frag_picker::VallResidue::z_
private

The documentation for this class was generated from the following files: