Rosetta Protocols  2014.35
Public Member Functions | Private Attributes | List of all members
protocols::protein_interface_design::filters::RmsdFilter Class Reference

#include <RmsdFilter.hh>

Public Member Functions

 RmsdFilter ()
 
 RmsdFilter (std::list< core::Size > const selection, bool const superimpose, core::Real const threshold, core::pose::PoseOP reference_pose)
 
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
 
protocols::filters::FilterOP clone () const
 
protocols::filters::FilterOP fresh_instance () const
 
void report (std::ostream &out, core::pose::Pose const &pose) const
 
void reference_pose (core::pose::PoseOP ref)
 
void selection (std::list< core::Size > const &sele)
 
void superimpose (bool s)
 
bool superimpose () const
 
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
virtual ~RmsdFilter ()
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose)
 
void superimpose_on_all (bool const b)
 
bool superimpose_on_all () const
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
virtual ~Filter ()
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void apply (core::io::serialization::PipeMap &pmap)
 
virtual void score (core::io::serialization::PipeMap &pmap)
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
 
virtual std::string name () const
 

Private Attributes

std::list< core::Sizeselection_
 
bool superimpose_
 
bool symmetry_
 
core::Real threshold_
 
core::pose::PoseOP reference_pose_
 
bool selection_from_segment_cache_
 
bool superimpose_on_all_
 
bool specify_both_spans_
 
bool CA_only_
 
core::Size begin_native_
 
core::Size end_native_
 
core::Size begin_pose_
 
core::Size end_pose_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RmsdFilter::RmsdFilter ( )
protocols::protein_interface_design::filters::RmsdFilter::RmsdFilter ( std::list< core::Size > const  selection,
bool const  superimpose,
core::Real const  threshold,
core::pose::PoseOP  reference_pose 
)

References filters.

protocols::protein_interface_design::filters::RmsdFilter::~RmsdFilter ( )
virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::RmsdFilter::apply ( core::pose::Pose const &  pose) const
virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), rmsd, threshold_, and protocols::protein_interface_design::filters::TR.

protocols::filters::FilterOP protocols::protein_interface_design::filters::RmsdFilter::clone ( ) const
virtual

Implements protocols::filters::Filter.

References RmsdFilter().

core::Real protocols::protein_interface_design::filters::RmsdFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::RmsdFilter::fresh_instance ( ) const
inlinevirtual

Implements protocols::filters::Filter.

References RmsdFilter().

void protocols::protein_interface_design::filters::RmsdFilter::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap data_map,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  reference_pose 
)
virtual
void protocols::protein_interface_design::filters::RmsdFilter::reference_pose ( core::pose::PoseOP  ref)
inline
void protocols::protein_interface_design::filters::RmsdFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
virtual

Reimplemented from protocols::filters::Filter.

References compute(), and rmsd.

core::Real protocols::protein_interface_design::filters::RmsdFilter::report_sm ( core::pose::Pose const &  ) const
virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and rmsd.

Referenced by protocols::enzdes::RemoveLigandFilter::report_sm().

void protocols::protein_interface_design::filters::RmsdFilter::selection ( std::list< core::Size > const &  sele)
inline
void protocols::protein_interface_design::filters::RmsdFilter::superimpose ( bool  s)
inline
bool protocols::protein_interface_design::filters::RmsdFilter::superimpose ( ) const
inline

References superimpose_.

void protocols::protein_interface_design::filters::RmsdFilter::superimpose_on_all ( bool const  b)
inline
bool protocols::protein_interface_design::filters::RmsdFilter::superimpose_on_all ( ) const
inline

References superimpose_on_all_.

Referenced by compute(), and parse_my_tag().

Member Data Documentation

core::Size protocols::protein_interface_design::filters::RmsdFilter::begin_native_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::RmsdFilter::begin_pose_
private

Referenced by compute(), and parse_my_tag().

bool protocols::protein_interface_design::filters::RmsdFilter::CA_only_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::RmsdFilter::end_native_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::RmsdFilter::end_pose_
private

Referenced by parse_my_tag().

core::pose::PoseOP protocols::protein_interface_design::filters::RmsdFilter::reference_pose_
private
std::list< core::Size > protocols::protein_interface_design::filters::RmsdFilter::selection_
private
bool protocols::protein_interface_design::filters::RmsdFilter::selection_from_segment_cache_
private

Referenced by compute().

bool protocols::protein_interface_design::filters::RmsdFilter::specify_both_spans_
private

Referenced by compute(), and parse_my_tag().

bool protocols::protein_interface_design::filters::RmsdFilter::superimpose_
private

Referenced by compute(), and superimpose().

bool protocols::protein_interface_design::filters::RmsdFilter::superimpose_on_all_
private

Referenced by superimpose_on_all().

bool protocols::protein_interface_design::filters::RmsdFilter::symmetry_
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::protein_interface_design::filters::RmsdFilter::threshold_
private

Referenced by apply().


The documentation for this class was generated from the following files: