protocols::simple_filters::HolesFilter Class Reference

#include <HolesFilter.hh>

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef std::string	String
typedef utility::tag::TagCOP	TagCOP
typedef protocols::filters::Filters_map	Filters_map
typedef basic::datacache::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	HolesFilter ()
	HolesFilter (HolesFilter const &rval)
virtual	~HolesFilter ()
virtual filters::FilterOP	clone () const
virtual filters::FilterOP	fresh_instance () const
void	filtered_value (Real const &ss)
virtual std::string	name () const
virtual void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...
Real	compute (Pose const &pose) const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filtered_value_
String	cmd_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::simple_filters::HolesFilter::DataMap

typedef protocols::filters::Filter protocols::simple_filters::HolesFilter::Filter

typedef protocols::filters::FilterOP protocols::simple_filters::HolesFilter::FilterOP

typedef protocols::filters::Filters_map protocols::simple_filters::HolesFilter::Filters_map

typedef protocols::moves::Movers_map protocols::simple_filters::HolesFilter::Movers_map

typedef core::pose::Pose protocols::simple_filters::HolesFilter::Pose

typedef core::Real protocols::simple_filters::HolesFilter::Real

typedef std::string protocols::simple_filters::HolesFilter::String

typedef protocols::filters::Filter protocols::simple_filters::HolesFilter::Super

typedef utility::tag::TagCOP protocols::simple_filters::HolesFilter::TagCOP

Constructor & Destructor Documentation

protocols::simple_filters::HolesFilter::HolesFilter

(

)

Referenced by clone(), and fresh_instance().

protocols::simple_filters::HolesFilter::HolesFilter

(

HolesFilter const &

rval

)

virtual protocols::simple_filters::HolesFilter::~HolesFilter ( )

inlinevirtual

Member Function Documentation

bool protocols::simple_filters::HolesFilter::apply ( Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filtered_value_, and protocols::simple_filters::tr.

virtual filters::FilterOP protocols::simple_filters::HolesFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References HolesFilter().

HolesFilter::Real protocols::simple_filters::HolesFilter::compute

(

Pose const &

pose

)

const

References cmd_, compute_holes_score(), core::scoring::packing::compute_holes_score(), runtime_assert, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::HolesFilter::filtered_value

(

Real const &

ss

)

References filtered_value_.

virtual filters::FilterOP protocols::simple_filters::HolesFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References HolesFilter().

virtual std::string protocols::simple_filters::HolesFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

void protocols::simple_filters::HolesFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &  , filters::Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

References cmd_, filtered_value_, and protocols::simple_filters::tr.

void protocols::simple_filters::HolesFilter::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

used to report score

Reimplemented from protocols::filters::Filter.

References compute().

HolesFilter::Real protocols::simple_filters::HolesFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

String protocols::simple_filters::HolesFilter::cmd_

private

Referenced by compute(), and parse_my_tag().

Real protocols::simple_filters::HolesFilter::filtered_value_

private

Referenced by apply(), filtered_value(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/HolesFilter.hh
• src/protocols/simple_filters/HolesFilter.cc