protocols::match::output::MatchCollisionFilter Class Reference

#include <UpstreamCollisionFilter.hh>

Public Types
typedef core::Real	Real

Public Member Functions
	MatchCollisionFilter (std::string filter_name, UpstreamHitCacherOP coordinate_cacher)
virtual	~MatchCollisionFilter ()
virtual bool	passes_filter (match const &m) const =0
	Returns true if the given match passes this filter. More...
virtual bool	passes_filter (match_dspos1 const &m) const =0
void	set_filter_by_lj (bool setting)
void	set_lj_cutoff (Real setting)
void	set_lj_atr_weight (Real setting)
void	set_lj_rep_weight (Real setting)
void	set_lj_sol_weight (Real setting)
virtual void	set_tolerated_overlap (Real setting)
bool	filter_by_lj () const
Real	wfa_atr () const
Real	wfa_rep () const
Real	wfa_sol () const
Real	lj_cutoff () const
Real	tolerated_overlap () const
core::pose::PoseCOP	empty_pose () const
core::scoring::ScoreFunctionOP	empty_sfxn () const
core::scoring::methods::ShortRangeTwoBodyEnergyCOP	etable_energy () const
BumpGridCOP	bump_grid () const
Public Member Functions inherited from protocols::match::output::MatchFilter
	MatchFilter (std::string filter_name)
virtual	~MatchFilter ()
std::string	filter_name () const

Protected Attributes
UpstreamHitCacherOP	cacher_

Private Attributes
bool	filter_by_lj_
Real	wfa_atr_
Real	wfa_rep_
Real	wfa_sol_
Real	lj_cutoff_
Real	tolerated_overlap_
core::pose::PoseOP	empty_pose_
core::scoring::ScoreFunctionOP	empty_sfxn_
core::scoring::methods::ShortRangeTwoBodyEnergyOP	etable_energy_
BumpGridOP	bump_grid_

Member Typedef Documentation

typedef core::Real protocols::match::output::MatchCollisionFilter::Real

Constructor & Destructor Documentation

protocols::match::output::MatchCollisionFilter::MatchCollisionFilter	(	std::string	filter_name,
		UpstreamHitCacherOP	coordinate_cacher
	)

References scoring.

protocols::match::output::MatchCollisionFilter::~MatchCollisionFilter ( )

virtual

Member Function Documentation

BumpGridCOP protocols::match::output::MatchCollisionFilter::bump_grid

(

)

const

References bump_grid_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_hardsphere_filter(), protocols::match::output::UpstreamCollisionFilter::passes_hardsphere_filter(), and protocols::match::output::UpstreamDownstreamCollisionFilter::set_tolerated_overlap().

core::pose::PoseCOP protocols::match::output::MatchCollisionFilter::empty_pose

(

)

const

References empty_pose_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

core::scoring::ScoreFunctionOP protocols::match::output::MatchCollisionFilter::empty_sfxn

(

)

const

References empty_sfxn_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

core::scoring::methods::ShortRangeTwoBodyEnergyCOP protocols::match::output::MatchCollisionFilter::etable_energy

(

)

const

References etable_energy_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

bool protocols::match::output::MatchCollisionFilter::filter_by_lj

(

)

const

References filter_by_lj_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

MatchCollisionFilter::Real protocols::match::output::MatchCollisionFilter::lj_cutoff

(

)

const

References lj_cutoff_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

virtual bool protocols::match::output::MatchCollisionFilter::passes_filter ( match const &  m ) const

pure virtual

Returns true if the given match passes this filter.

Implements protocols::match::output::MatchFilter.

Implemented in protocols::match::output::UpstreamCollisionFilter, and protocols::match::output::UpstreamDownstreamCollisionFilter.

virtual bool protocols::match::output::MatchCollisionFilter::passes_filter ( match_dspos1 const &  m ) const

pure virtual

Implements protocols::match::output::MatchFilter.

Implemented in protocols::match::output::UpstreamCollisionFilter, and protocols::match::output::UpstreamDownstreamCollisionFilter.

void protocols::match::output::MatchCollisionFilter::set_filter_by_lj

(

bool

setting

)

References etable_energy_, and filter_by_lj_.

void protocols::match::output::MatchCollisionFilter::set_lj_atr_weight

(

Real

setting

)

References wfa_atr_.

void protocols::match::output::MatchCollisionFilter::set_lj_cutoff

(

Real

setting

)

References lj_cutoff_.

void protocols::match::output::MatchCollisionFilter::set_lj_rep_weight

(

Real

setting

)

References wfa_rep_.

void protocols::match::output::MatchCollisionFilter::set_lj_sol_weight

(

Real

setting

)

References wfa_sol_.

void protocols::match::output::MatchCollisionFilter::set_tolerated_overlap ( Real  setting )

virtual

Reimplemented in protocols::match::output::UpstreamDownstreamCollisionFilter.

References bump_grid_, and tolerated_overlap_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::set_tolerated_overlap().

MatchCollisionFilter::Real protocols::match::output::MatchCollisionFilter::tolerated_overlap

(

)

const

References tolerated_overlap_.

MatchCollisionFilter::Real protocols::match::output::MatchCollisionFilter::wfa_atr

(

)

const

References wfa_atr_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

MatchCollisionFilter::Real protocols::match::output::MatchCollisionFilter::wfa_rep

(

)

const

References wfa_rep_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

MatchCollisionFilter::Real protocols::match::output::MatchCollisionFilter::wfa_sol

(

)

const

References wfa_sol_.

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_filter().

Member Data Documentation

BumpGridOP protocols::match::output::MatchCollisionFilter::bump_grid_

private

Referenced by bump_grid(), and set_tolerated_overlap().

UpstreamHitCacherOP protocols::match::output::MatchCollisionFilter::cacher_

protected

Referenced by protocols::match::output::UpstreamDownstreamCollisionFilter::passes_etable_filter(), protocols::match::output::UpstreamCollisionFilter::passes_filter(), protocols::match::output::UpstreamDownstreamCollisionFilter::passes_hardsphere_filter(), and protocols::match::output::UpstreamCollisionFilter::passes_hardsphere_filter().

core::pose::PoseOP protocols::match::output::MatchCollisionFilter::empty_pose_

private

Referenced by empty_pose().

core::scoring::ScoreFunctionOP protocols::match::output::MatchCollisionFilter::empty_sfxn_

private

Referenced by empty_sfxn().

core::scoring::methods::ShortRangeTwoBodyEnergyOP protocols::match::output::MatchCollisionFilter::etable_energy_

private

Referenced by etable_energy(), and set_filter_by_lj().

bool protocols::match::output::MatchCollisionFilter::filter_by_lj_

private

Referenced by filter_by_lj(), and set_filter_by_lj().

Real protocols::match::output::MatchCollisionFilter::lj_cutoff_

private

Referenced by lj_cutoff(), and set_lj_cutoff().

Real protocols::match::output::MatchCollisionFilter::tolerated_overlap_

private

Referenced by set_tolerated_overlap(), and tolerated_overlap().

Real protocols::match::output::MatchCollisionFilter::wfa_atr_

private

Referenced by set_lj_atr_weight(), and wfa_atr().

Real protocols::match::output::MatchCollisionFilter::wfa_rep_

private

Referenced by set_lj_rep_weight(), and wfa_rep().

Real protocols::match::output::MatchCollisionFilter::wfa_sol_

private

Referenced by set_lj_sol_weight(), and wfa_sol().

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The documentation for this class was generated from the following files:

• src/protocols/match/output/UpstreamCollisionFilter.hh
• src/protocols/match/output/UpstreamCollisionFilter.cc