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Rosetta Protocols
2014.35
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Rosetta Protocols
2014.35
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#include <EnzFilters.hh>
Public Types | |
| typedef protocols::filters::Filter | Filter |
| typedef protocols::filters::FilterOP | FilterOP |
| typedef protocols::filters::Filters_map | Filters_map |
Public Member Functions | |
| LigDSasaFilter () | |
| LigDSasaFilter (core::Real const lower_threshold, core::Real const upper_threshold) | |
| bool | apply (core::pose::Pose const &pose) const |
| Returns true if the given pose passes the filter, false otherwise. More... | |
| void | report (std::ostream &out, core::pose::Pose const &pose) const |
| core::Real | report_sm (core::pose::Pose const &pose) const |
| used to report filter internals through a score or silent file More... | |
| core::Real | compute (core::pose::Pose const &pose) const |
| FilterOP | clone () const |
| FilterOP | fresh_instance () const |
| virtual | ~LigDSasaFilter () |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
 Public Member Functions inherited from protocols::filters::Filter | |
| Filter () | |
| Filter (std::string const &) | |
| Filter (Filter const &) | |
| virtual | ~Filter () |
| virtual std::string | get_type () const |
| std::string | get_user_defined_name () const |
| void | set_user_defined_name (std::string const &name) |
| virtual void | clear () |
| used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
| virtual void | apply (core::io::serialization::PipeMap &pmap) |
| virtual void | score (core::io::serialization::PipeMap &pmap) |
| virtual core::Real | score (core::pose::Pose &pose) |
| virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks) |
| virtual std::string | name () const |
Private Attributes | |
| core::Real | lower_threshold_ |
| core::Real | upper_threshold_ |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::filters::Filter | |
| std::string | scorename_ |
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inline |
Referenced by clone(), and fresh_instance().
| protocols::enzdes::LigDSasaFilter::LigDSasaFilter | ( | core::Real const | lower_threshold, |
| core::Real const | upper_threshold | ||
| ) |
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virtual |
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virtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), lower_threshold_, protocols::enzdes::TR, and upper_threshold_.
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inlinevirtual |
Implements protocols::filters::Filter.
References LigDSasaFilter().
| core::Real protocols::enzdes::LigDSasaFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References core::pose::Pose::chain(), core::chemical::ResidueType::is_ligand(), core::pose::Pose::metric(), core::pose::Pose::residue_type(), sasa, utility::to_string(), core::pose::Pose::total_residue(), protocols::enzdes::TR, utility_exit_with_message, and basic::MetricValue< T >::value().
Referenced by apply(), report(), and report_sm().
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inlinevirtual |
Implements protocols::filters::Filter.
References LigDSasaFilter().
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virtual |
Reimplemented from protocols::filters::Filter.
References lower_threshold_, protocols::enzdes::TR, and upper_threshold_.
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virtual |
Reimplemented from protocols::filters::Filter.
References compute().
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virtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
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private |
Referenced by apply(), and parse_my_tag().
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private |
Referenced by apply(), and parse_my_tag().
1.8.7