protocols::motif_grafting::movers::MotifMatch Class Reference

#include <MotifGraftMover.hh>

Public Member Functions
	MotifMatch ()
	MotifMatch (motif2scaffold_data data)
bool	operator< (const MotifMatch &other) const
motif2scaffold_data	get_scaffold_fragment_data () const
core::Real	get_RMSD () const
core::Real	get_motif_fragments_RMSD () const
core::Real	get_clash_score () const
bool	b_is_full_motif_bb_alignment () const
std::string	get_allow_independent_alignment_per_fragment_mode () const
std::string	get_full_motif_bb_alignment_mode () const
std::string	get_motif_ranges (core::Size const &ndx_shift) const
std::string	get_scaffold_ranges (core::Size const &ndx_shift) const
std::string	get_scaffold2motif_size_change () const

Private Attributes
motif2scaffold_data	scaffold_fragment_data
core::Real	RMSD
core::Real	motif_fragments_RMSD
core::Real	clash_score
utility::vector1 < motif2scaffold_indexes >	v_indexes
bool	b_allow_independent_alignment_per_fragment
bool	b_full_motif_bb_alignment
bool	b_graft_only_hotspots_by_sidechain_replacement

Constructor & Destructor Documentation

protocols::motif_grafting::movers::MotifMatch::MotifMatch ( )

inline

protocols::motif_grafting::movers::MotifMatch::MotifMatch ( motif2scaffold_data  data )

inline

References protocols::motif_grafting::movers::motif2scaffold_data::b_allow_independent_alignment_per_fragment, b_allow_independent_alignment_per_fragment, protocols::motif_grafting::movers::motif2scaffold_data::b_full_motif_bb_alignment, b_full_motif_bb_alignment, protocols::motif_grafting::movers::motif2scaffold_data::b_graft_only_hotspots_by_sidechain_replacement, b_graft_only_hotspots_by_sidechain_replacement, protocols::motif_grafting::movers::motif2scaffold_data::clash_score, clash_score, protocols::motif_grafting::movers::motif2scaffold_data::motif_fragments_RMSD, motif_fragments_RMSD, protocols::motif_grafting::movers::motif2scaffold_data::RMSD, RMSD, scaffold_fragment_data, protocols::motif_grafting::movers::motif2scaffold_data::v_indexes, and v_indexes.

Member Function Documentation

bool protocols::motif_grafting::movers::MotifMatch::b_is_full_motif_bb_alignment ( ) const

inline

References b_full_motif_bb_alignment.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

std::string protocols::motif_grafting::movers::MotifMatch::get_allow_independent_alignment_per_fragment_mode ( ) const

inline

References b_allow_independent_alignment_per_fragment.

core::Real protocols::motif_grafting::movers::MotifMatch::get_clash_score ( ) const

inline

References clash_score.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

std::string protocols::motif_grafting::movers::MotifMatch::get_full_motif_bb_alignment_mode ( ) const

inline

References b_full_motif_bb_alignment.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

core::Real protocols::motif_grafting::movers::MotifMatch::get_motif_fragments_RMSD ( ) const

inline

References motif_fragments_RMSD.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

std::string protocols::motif_grafting::movers::MotifMatch::get_motif_ranges ( core::Size const &  ndx_shift ) const

inline

References utility::to_string(), and v_indexes.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

core::Real protocols::motif_grafting::movers::MotifMatch::get_RMSD ( ) const

inline

References RMSD.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

std::string protocols::motif_grafting::movers::MotifMatch::get_scaffold2motif_size_change ( ) const

inline

References utility::to_string(), and v_indexes.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

motif2scaffold_data protocols::motif_grafting::movers::MotifMatch::get_scaffold_fragment_data ( ) const

inline

References scaffold_fragment_data.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

std::string protocols::motif_grafting::movers::MotifMatch::get_scaffold_ranges ( core::Size const &  ndx_shift ) const

inline

References utility::to_string(), and v_indexes.

Referenced by protocols::motif_grafting::movers::MotifGraftMover::generate_match_pose().

bool protocols::motif_grafting::movers::MotifMatch::operator< ( const MotifMatch &  other ) const

inline

References b_allow_independent_alignment_per_fragment, motif_fragments_RMSD, and RMSD.

Member Data Documentation

bool protocols::motif_grafting::movers::MotifMatch::b_allow_independent_alignment_per_fragment

private

Referenced by get_allow_independent_alignment_per_fragment_mode(), MotifMatch(), and operator<().

bool protocols::motif_grafting::movers::MotifMatch::b_full_motif_bb_alignment

private

Referenced by b_is_full_motif_bb_alignment(), get_full_motif_bb_alignment_mode(), and MotifMatch().

bool protocols::motif_grafting::movers::MotifMatch::b_graft_only_hotspots_by_sidechain_replacement

private

Referenced by MotifMatch().

core::Real protocols::motif_grafting::movers::MotifMatch::clash_score

private

Referenced by get_clash_score(), and MotifMatch().

core::Real protocols::motif_grafting::movers::MotifMatch::motif_fragments_RMSD

private

Referenced by get_motif_fragments_RMSD(), MotifMatch(), and operator<().

core::Real protocols::motif_grafting::movers::MotifMatch::RMSD

private

Referenced by get_RMSD(), MotifMatch(), and operator<().

motif2scaffold_data protocols::motif_grafting::movers::MotifMatch::scaffold_fragment_data

private

Referenced by get_scaffold_fragment_data(), and MotifMatch().

utility::vector1< motif2scaffold_indexes > protocols::motif_grafting::movers::MotifMatch::v_indexes

private

Referenced by get_motif_ranges(), get_scaffold2motif_size_change(), get_scaffold_ranges(), and MotifMatch().

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The documentation for this class was generated from the following file:

• src/protocols/motif_grafting/movers/MotifGraftMover.hh