protocols::generalized_kinematic_closure::perturber Namespace Reference

Classes
class	GeneralizedKICperturber

Typedefs
typedef utility::pointer::owning_ptr < GeneralizedKICperturber >	GeneralizedKICperturberOP
typedef utility::pointer::owning_ptr < GeneralizedKICperturber const >	GeneralizedKICperturberCOP
typedef utility::vector1 < GeneralizedKICperturberOP >	GeneralizedKICperturberOPs
typedef utility::vector1 < GeneralizedKICperturberCOP >	GeneralizedKICperturberCOPs

Enumerations
enum	perturber_effect {   no_effect = 1, set_dihedral, set_bondangle, set_bondlength,   randomize_dihedral, randomize_alpha_backbone_by_rama, perturb_dihedral, sample_cis_peptide_bond,   unknown_effect, end_of_effect_list = unknown_effect }
	The effect of the perturber (e.g. randomizing alpha-amino acid phi/psi angles, altering side-chains, etc.) More...

Variables
static numeric::random::RandomGenerator	RG (40031)
static basic::Tracer	TR ("protocols.generalized_kinematic_closure.perturber.GeneralizedKICperturber")

Typedef Documentation

typedef utility::pointer::owning_ptr< GeneralizedKICperturber const > protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberCOP

typedef utility::vector1<GeneralizedKICperturberCOP> protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberCOPs

typedef utility::pointer::owning_ptr< GeneralizedKICperturber > protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberOP

typedef utility::vector1<GeneralizedKICperturberOP> protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberOPs

Enumeration Type Documentation

enum protocols::generalized_kinematic_closure::perturber::perturber_effect

The effect of the perturber (e.g. randomizing alpha-amino acid phi/psi angles, altering side-chains, etc.)

Perturbation effects starting with "set" set parameters to defined values (e.g. set the third phi angle to 45 degrees). Perturbation effects starting with "randomize" set parameters based on random distributions, with no consideration of the initial value. Perturbation effects starting with "jitter" set parameters to some new value based on a random distribution about the initial value.

Enumerator
no_effect
set_dihedral
set_bondangle
set_bondlength
randomize_dihedral
randomize_alpha_backbone_by_rama
perturb_dihedral
sample_cis_peptide_bond
unknown_effect
end_of_effect_list

Variable Documentation

numeric::random::RandomGenerator protocols::generalized_kinematic_closure::perturber::RG(40031)

static

basic::Tracer protocols::generalized_kinematic_closure::perturber::TR("protocols.generalized_kinematic_closure.perturber.GeneralizedKICperturber")

static