Rosetta Protocols  2014.35
Namespaces | Functions
util.hh File Reference

read jump-definition file setups fold tree an chainbreak variants loop code didn't work because fold-tree to complicated ( overlapping loops ) More...

#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.fwd.hh>
#include <core/types.hh>
#include <core/fragment/JumpingFrame.fwd.hh>
#include <protocols/checkpoint/CheckPointer.fwd.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::jumping
 

Functions

bool protocols::jumping::remove_cut (core::Size cutpoint, core::pose::Pose &pose, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree())
 
bool protocols::jumping::remove_cut (core::Size cutpoint, core::kinematics::FoldTree &fold_tree, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree())
 
void protocols::jumping::close_chainbreaks (loops::loop_closure::ccd::SlidingWindowLoopClosureOP closure_protocol, Pose &open_pose, protocols::checkpoint::CheckPointer &checkpoint, const std::string &decoy_tag, core::kinematics::FoldTree const &final_fold_tree_in)
 
void protocols::jumping::safe_secstruct (pose::Pose &pose)
 
void protocols::jumping::get_pleating (pose::Pose const &pose, Size const pos1, Size const pos2, Size &orientation, Size &pleating)
 
void protocols::jumping::get_pairing_geometry (pose::Pose const &pose, Size const res1, Size const res2, Real &orientation, Real &pleating1, Real &pleating2)
 
core::fragment::JumpingFrameOP protocols::jumping::generate_empty_jump_frame (Size startpos, Size endpos, Size length)
 
core::fragment::JumpingFrameOP protocols::jumping::generate_jump_frame (Size startpos, Size endpos, bool bWithTorsion)
 
void protocols::jumping::assign_ss_dssp (core::pose::Pose &pose)
 Assign secondary structure using DSSP. More...
 

Detailed Description

read jump-definition file setups fold tree an chainbreak variants loop code didn't work because fold-tree to complicated ( overlapping loops )

Detailed:
Author
Oliver Lange