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Rosetta Protocols
2014.35
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Rosetta Protocols
2014.35
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applies csts (currently only coordinate csts) to every designable position in pose according to taskoperations More...
#include <TaskAwareCsts.hh>
Public Types | |
| typedef core::pose::Pose | Pose |
 Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef protocols::filters::Filters_map | Filters_map |
| typedef std::list< std::string > | Strings |
Public Member Functions | |
| TaskAwareCsts () | |
| void | apply (Pose &pose) |
| virtual std::string | get_name () const |
| Each derived class must specify its name. The class name. More... | |
| protocols::moves::MoverOP | clone () const |
| Return a clone of the Mover object. More... | |
| protocols::moves::MoverOP | fresh_instance () const |
| Generates a new Mover object freshly created with the default ctor. More... | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
| Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More... | |
| virtual | ~TaskAwareCsts () |
| core::pack::task::TaskFactoryOP | task_factory () const |
| void | task_factory (core::pack::task::TaskFactoryOP tf) |
| std::string | cst_type () const |
| void | cst_type (std::string const type) |
| std::string | anchor_resnum () const |
| void | anchor_resnum (std::string const c) |
| Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual | ~Mover () |
| virtual MoverSP | create () |
| virtual void | apply (core::io::serialization::PipeMap &pmap) |
| virtual void | parse_state (SerializableState const &state) |
| virtual void | parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) |
| virtual void | save_state (SerializableState &state) |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| Mover (Mover const &other) | |
| Mover & | operator= (Mover const &other) |
| assignment operator More... | |
| virtual core::Real | last_proposal_density_ratio () |
| std::string const & | type () const |
| void | set_type (std::string const &setting) |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| void | set_current_tag (std::string const &new_tag) |
| virtual void | set_input_pose (PoseCOP pose) |
| setter for poses contained for rms More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| void | type (const std::string &type_in) |
| std::string | get_type () const |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | show (std::ostream &output=std::cout) const |
| Outputs details about the Mover, including current settings. More... | |
Private Attributes | |
| core::pack::task::TaskFactoryOP | task_factory_ |
| std::string | cst_type_ |
| dflt NULL (design all); designable residues will have the constraints applied to them. More... | |
| std::string | anchor_resnum_ |
Additional Inherited Members | |
| Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
| Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
applies csts (currently only coordinate csts) to every designable position in pose according to taskoperations
| protocols::protein_interface_design::movers::TaskAwareCsts::TaskAwareCsts | ( | ) |
Referenced by clone().
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virtual |
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inline |
References anchor_resnum_.
Referenced by parse_my_tag().
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inline |
References anchor_resnum_.
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virtual |
Implements protocols::moves::Mover.
References core::pose::Pose::add_constraints(), anchor_resnum_, core::conformation::Residue::atom_index(), cst, cst_type_, core::pose::parse_resnum(), core::pose::Pose::residue(), protocols::rosetta_scripts::residue_packer_states(), runtime_assert, task_factory(), and protocols::protein_interface_design::movers::TR.
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virtual |
Return a clone of the Mover object.
clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.
Reimplemented from protocols::moves::Mover.
References TaskAwareCsts().
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inline |
References cst_type_.
Referenced by parse_my_tag().
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inline |
References cst_type_, and protocols::moves::Mover::type().
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inlinevirtual |
Generates a new Mover object freshly created with the default ctor.
fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.
Reimplemented from protocols::moves::Mover.
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virtual |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
References protocols::protein_interface_design::movers::TaskAwareCstsCreator::mover_name().
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virtual |
Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.
Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.
Reimplemented from protocols::moves::Mover.
References anchor_resnum(), cst_type(), protocols::rosetta_scripts::parse_task_operations(), task_factory(), and protocols::protein_interface_design::movers::TR.
| core::pack::task::TaskFactoryOP protocols::protein_interface_design::movers::TaskAwareCsts::task_factory | ( | ) | const |
References task_factory_.
Referenced by apply(), and parse_my_tag().
| void protocols::protein_interface_design::movers::TaskAwareCsts::task_factory | ( | core::pack::task::TaskFactoryOP | tf | ) |
References task_factory_.
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private |
Referenced by anchor_resnum(), and apply().
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private |
dflt NULL (design all); designable residues will have the constraints applied to them.
Referenced by apply(), and cst_type().
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private |
Referenced by task_factory().
1.8.7