SSMotifFinderFilter.cc File Reference

#include <protocols/simple_filters/SSMotifFinderFilter.hh>
#include <protocols/simple_filters/SSMotifFinderFilterCreator.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/selection.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <fstream>
#include <utility/io/izstream.hh>
#include <sstream>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/kinematics/Jump.hh>
#include <core/import_pose/import_pose.hh>
#include <boost/foreach.hpp>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/Edge.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/toolbox/superimpose.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_filters

Functions
core::Real	protocols::simple_filters::atom_distance (core::conformation::Residue const &r1, std::string const a1, core::conformation::Residue const &r2, std::string const a2)
	compute the atomic distance between two atoms on two residues More...
core::Real	protocols::simple_filters::res_rmsd (utility::vector1< core::Size > const pose_res_for_rmsd, utility::vector1< core::Size > const template_res_for_rmsd, core::pose::Pose const &copy_pose, core::pose::Pose const &template_pose)
void	protocols::simple_filters::write_to_file (std::string const filename, core::Size const stem1, core::Size const stem2, core::Real const rmsd, std::string const pdbname, core::pose::Pose const &pose)
utility::vector1 < numeric::xyzVector < core::Real > >	protocols::simple_filters::coords (core::pose::Pose const &pose, utility::vector1< core::Size > const positions)

Variables
static basic::Tracer	protocols::simple_filters::TR ("protocols.simple_filters.SSMotifFinder")

Detailed Description

Author

Ravit Netzer & Sarel Fleishman