protocols::motif_hash::XformScore Class Reference

#include <motif_hash_stuff.hh>

Public Types
typedef uint64_t	Key
typedef double	Count
typedef numeric::geometry::hashing::SixDCoordinateBinner	SixDCoordinateBinner
typedef numeric::geometry::hashing::bin_index_hasher	bin_index_hasher
typedef boost::unordered_map < Key, Count, bin_index_hasher >	CountMap

Public Member Functions
	XformScore ()
void	add_xform_count (Real6 const &xform)
void	set_score (Key const &, Count const &count)
void	add_score (Key const &, Count const &count)
Count	score_of_bin (Real6 const &xform) const
Count	score_of_bin (Key const &key) const
Real	score_of_bin_normalized (Real6 const &xform) const
bool	write_binary (std::ostream &out) const
bool	write_binary (std::string const &fname) const
bool	read_binary (std::istream &in, bool clearme=true)
bool	read_binary (std::string const &fname, bool clearme=true)
bool	read_binary (utility::vector1< std::string > const &fnames)
Size	num_bins () const
Size	num_samples () const
void	print_scores (std::ostream &out, std::string const tag="XH ") const
void	print_scores_norm (std::ostream &out, std::string const tag="XH ") const
void	clear ()
Real	cart_size () const
Key	bin_index (Real6 const &rt) const
void	print_quantiles (std::ostream &out, int num) const

Public Attributes
SixDCoordinateBinner	hasher_
CountMap	total_count_
double	cart_size_
double	cart_resl_
double	angle_resl_
Size	num_samples_

Friends
std::ostream &	operator<< (std::ostream &out, XformScore const &x)

Member Typedef Documentation

typedef numeric::geometry::hashing::bin_index_hasher protocols::motif_hash::XformScore::bin_index_hasher

typedef double protocols::motif_hash::XformScore::Count

typedef boost::unordered_map< Key, Count, bin_index_hasher > protocols::motif_hash::XformScore::CountMap

typedef uint64_t protocols::motif_hash::XformScore::Key

typedef numeric:: geometry::hashing::SixDCoordinateBinner protocols::motif_hash::XformScore::SixDCoordinateBinner

Constructor & Destructor Documentation

protocols::motif_hash::XformScore::XformScore

(

)

References angle_resl_, cart_resl_, cart_size_, hash_angle_resl, mh::hash_angle_resl, mh::hash_cart_resl, hash_cart_resl, mh::hash_cart_size, hash_cart_size, mh, num_samples_, option, and options.

Referenced by protocols::motif_hash::get_xform_score_from_file().

Member Function Documentation

void protocols::motif_hash::XformScore::add_score	(	Key const &	key,
		Count const &	count
	)

References score_of_bin(), and total_count_.

Referenced by read_binary().

void protocols::motif_hash::XformScore::add_xform_count

(

Real6 const &

xform

)

References bin_index(), key, num_samples_, and total_count_.

Referenced by protocols::motif_hash::harvest_scores().

XformScore::Key protocols::motif_hash::XformScore::bin_index

(

Real6 const &

rt

)

const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_index(), and hasher_.

Referenced by add_xform_count(), score_of_bin(), and score_of_bin_normalized().

Real protocols::motif_hash::XformScore::cart_size ( ) const

inline

References cart_size_.

Referenced by protocols::motif_hash::MotifHash::get_matching_motifs(), read_binary(), and write_binary().

void protocols::motif_hash::XformScore::clear

(

)

References num_samples_, and total_count_.

Referenced by protocols::motif_hash::MotifHits::filter_redundant(), and read_binary().

Size protocols::motif_hash::XformScore::num_bins

(

)

const

References total_count_.

Referenced by protocols::motif_hash::operator<<(), and write_binary().

Size protocols::motif_hash::XformScore::num_samples

(

)

const

References num_samples_.

Referenced by protocols::motif_hash::operator<<(), and write_binary().

void protocols::motif_hash::XformScore::print_quantiles	(	std::ostream &	out,
		int	num
	)		const

References N, and total_count_.

Referenced by protocols::motif_hash::operator<<().

void protocols::motif_hash::XformScore::print_scores	(	std::ostream &	out,
		std::string const	tag = "XH "
	)		const

References key, and total_count_.

void protocols::motif_hash::XformScore::print_scores_norm	(	std::ostream &	out,
		std::string const	tag = "XH "
	)		const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_center_point(), numeric::geometry::hashing::SixDCoordinateBinner::bin_from_index(), center, hasher_, key, radians(), and total_count_.

bool protocols::motif_hash::XformScore::read_binary	(	std::istream &	in,
		bool	clearme = true
	)

References add_score(), angle_resl_, cart_resl_, cart_size(), cart_size_, clear(), cout, key, and utility_exit_with_message.

Referenced by protocols::motif_hash::get_xform_score_from_file(), protocols::motif_hash::print_scores(), and read_binary().

bool protocols::motif_hash::XformScore::read_binary	(	std::string const &	fname,
		bool	clearme = true
	)

References utility::io::izstream::close(), utility::io::izstream::good(), in, and read_binary().

bool protocols::motif_hash::XformScore::read_binary

(

utility::vector1< std::string > const &

fnames

)

XformScore::Count protocols::motif_hash::XformScore::score_of_bin

(

Real6 const &

xform

)

const

References bin_index(), key, and total_count_.

Referenced by add_score(), and score_of_bin_normalized().

XformScore::Count protocols::motif_hash::XformScore::score_of_bin

(

Key const &

key

)

const

References total_count_.

Real protocols::motif_hash::XformScore::score_of_bin_normalized

(

Real6 const &

xform

)

const

References numeric::geometry::hashing::SixDCoordinateBinner::bin_center_point(), numeric::geometry::hashing::SixDCoordinateBinner::bin_from_index(), bin_index(), center, hasher_, key, radians(), and score_of_bin().

void protocols::motif_hash::XformScore::set_score	(	Key const &	key,
		Count const &	count
	)

References total_count_.

bool protocols::motif_hash::XformScore::write_binary

(

std::ostream &

out

)

const

References angle_resl_, cart_resl_, cart_size(), cart_size_, basic::options::OptionKeys::mh::harvest_scores_min_count, key, num_bins(), num_samples(), option, and total_count_.

Referenced by write_binary().

bool protocols::motif_hash::XformScore::write_binary

(

std::string const &

fname

)

const

References utility::io::ozstream::close(), utility::io::ozstream::good(), and write_binary().

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, XformScore const &  x  )

friend

Member Data Documentation

double protocols::motif_hash::XformScore::angle_resl_

Referenced by protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

double protocols::motif_hash::XformScore::cart_resl_

Referenced by protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

double protocols::motif_hash::XformScore::cart_size_

Referenced by cart_size(), protocols::motif_hash::operator<<(), read_binary(), write_binary(), and XformScore().

SixDCoordinateBinner protocols::motif_hash::XformScore::hasher_

Referenced by bin_index(), print_scores_norm(), and score_of_bin_normalized().

Size protocols::motif_hash::XformScore::num_samples_

Referenced by add_xform_count(), clear(), num_samples(), and XformScore().

CountMap protocols::motif_hash::XformScore::total_count_

Referenced by add_score(), add_xform_count(), clear(), num_bins(), print_quantiles(), print_scores(), print_scores_norm(), score_of_bin(), set_score(), and write_binary().

---

The documentation for this class was generated from the following files:

• src/protocols/motif_hash/motif_hash_stuff.hh
• src/protocols/motif_hash/motif_hash_stuff.cc