Rosetta Protocols  2014.35
protocols::cluster::ClusterPhilStyle_Loop Member List

This is the complete list of members for protocols::cluster::ClusterPhilStyle_Loop, including all inherited members.

add_structure(core::pose::Pose &pose)protocols::cluster::ClusterBase
apply(core::pose::Pose &pose)protocols::cluster::GatherPosesMovervirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
calculate_distance_matrix()protocols::cluster::ClusterBase
check_tag(const std::string &query_tag)protocols::cluster::GatherPosesMover
clean_pose_store()protocols::cluster::ClusterBase
clear()protocols::cluster::GatherPosesMoverinline
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::cluster::ClusterPhilStyle_Loopinlinevirtual
cluster_radius_protocols::cluster::ClusterBaseprotected
ClusterBase()protocols::cluster::ClusterBase
clusterlistprotocols::cluster::ClusterBaseprotected
ClusterPhilStyle()protocols::cluster::ClusterPhilStyle
ClusterPhilStyle_Loop(protocols::loops::Loops loop_def)protocols::cluster::ClusterPhilStyle_Loopinline
create()protocols::moves::Movervirtual
create_constraints(std::string prefix, EnsembleConstraints &constraint_maker)protocols::cluster::ClusterBase
distance_matrixprotocols::cluster::ClusterBaseprotected
do_clustering(core::Size max_total_cluster)protocols::cluster::ClusterPhilStylevirtual
do_redistribution()protocols::cluster::ClusterPhilStyle
export_only_low(bool value=false)protocols::cluster::ClusterBaseinline
export_only_low_protocols::cluster::ClusterBaseprotected
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::moves::Movervirtual
GatherPosesMover()protocols::cluster::GatherPosesMover
get_additional_output()protocols::moves::Movervirtual
get_cluster_list() const protocols::cluster::ClusterBaseinline
get_cluster_radius()protocols::cluster::ClusterBase
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_distance_measure(const core::pose::Pose &pose1, const core::pose::Pose &pose2) const protocols::cluster::ClusterPhilStyle_Loopvirtual
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_median_rms()protocols::cluster::ClusterBaseinline
get_name() const protocols::cluster::ClusterPhilStyle_Loopvirtual
get_native_pose() const protocols::moves::Mover
get_pose_list()protocols::cluster::GatherPosesMoverinline
get_tag_list() const protocols::cluster::GatherPosesMoverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
limit_groups(int limit=-1)protocols::cluster::ClusterBase
limit_groupsize(int limit=-1)protocols::cluster::ClusterBase
limit_groupsize(core::Real percent_limit)protocols::cluster::ClusterBase
limit_total_structures(int limit=-1)protocols::cluster::ClusterBase
loop_def_protocols::cluster::ClusterPhilStyle_Loopprivate
median_rms_protocols::cluster::ClusterBaseprotected
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Movervirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
population_weight_protocols::cluster::ClusterBaseprotected
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
poselistprotocols::cluster::GatherPosesMoverprotected
print_cluster_assignment()protocols::cluster::ClusterBase
print_cluster_PDBs(std::string prefix)protocols::cluster::ClusterBase
print_clusters_silentfile(std::string prefix)protocols::cluster::ClusterBase
print_raw_numbers()protocols::cluster::ClusterBase
print_summary()protocols::cluster::ClusterBase
processed() const protocols::cluster::GatherPosesMoverinline
push_back(const core::pose::Pose &pose)protocols::cluster::GatherPosesMoverinline
random_limit_groupsize(core::Real percent_limit)protocols::cluster::ClusterBase
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
remove_highest_energy_member_of_each_group()protocols::cluster::ClusterBase
remove_singletons()protocols::cluster::ClusterBase
reset_status()protocols::moves::Mover
return_lowest_poses_in_clusters()protocols::cluster::ClusterBase
return_top_poses_in_clusters(core::Size count)protocols::cluster::ClusterBase
save_state(SerializableState &state)protocols::moves::Movervirtual
set_cluster_by_all_atom(bool const &setting)protocols::cluster::GatherPosesMoverinline
set_cluster_by_protein_backbone(bool const &setting)protocols::cluster::GatherPosesMoverinline
set_cluster_radius(core::Real cluster_radius)protocols::cluster::ClusterBase
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_filter(core::Real filter)protocols::cluster::GatherPosesMover
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_population_weight(core::Real population_weight)protocols::cluster::ClusterBase
set_score_function(core::scoring::ScoreFunctionOP sfxn)protocols::cluster::GatherPosesMover
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
sort_each_group_by_energy()protocols::cluster::ClusterBase
sort_groups_by_energy()protocols::cluster::ClusterBase
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
~ClusterPhilStyle()protocols::cluster::ClusterPhilStyleinlinevirtual
~ClusterPhilStyle_Loop()protocols::cluster::ClusterPhilStyle_Loopinlinevirtual
~Mover()protocols::moves::Movervirtual