Rosetta Protocols  2014.35
Namespaces | Functions | Variables
RNA_DeNovoProtocol.cc File Reference

protocols that are specific to RNA_DeNovoProtocol More...

#include <protocols/farna/RNA_DeNovoProtocol.hh>
#include <protocols/toolbox/AllowInsert.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/io/rna/RNA_DataReader.fwd.hh>
#include <protocols/farna/FullAtomRNA_Fragments.hh>
#include <protocols/farna/RNA_LoopCloser.hh>
#include <protocols/farna/RNA_LoopCloser.fwd.hh>
#include <protocols/farna/RNA_Minimizer.fwd.hh>
#include <protocols/farna/RNA_Minimizer.hh>
#include <protocols/farna/RNA_Relaxer.fwd.hh>
#include <protocols/farna/RNA_Relaxer.hh>
#include <protocols/farna/RNA_StructureParameters.hh>
#include <protocols/farna/RNA_ChunkLibrary.hh>
#include <protocols/farna/RNA_ChunkLibrary.fwd.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/farna/util.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MonteCarlo.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rna/RNA_LowResolutionPotential.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/copydofs/util.hh>
#include <basic/database/open.hh>
#include <core/io/silent/RNA_SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/util.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <core/pose/rna/RNA_BaseDoubletClasses.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/file/file_sys_util.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <sstream>
#include <fstream>
#include <protocols/viewer/GraphicsState.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>

Namespaces

 ObjexxFCL
 Application level code for relax-type protocols.
 
 ObjexxFCL::format
 
 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::farna
 

Functions

bool protocols::farna::check_in_base_pair_list (pose::rna::BasePair const &base_pair, utility::vector1< core::pose::rna::BasePair > const &base_pair_list)
 
std::ostream & protocols::farna::operator<< (std::ostream &os, RNA_DeNovoProtocol const &mover)
 

Variables

static
numeric::random::RandomGenerator 
protocols::farna::RG (12320)
 
static basic::Tracer protocols::farna::TR ("protocols.rna.RNA_DeNovoProtocol")
 

Detailed Description

protocols that are specific to RNA_DeNovoProtocol

Detailed:
Author
Rhiju Das, Parin Sripakdeevong, Fang-Chieh Chou