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| SequenceCoupling1BDConstraint () |
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| SequenceCoupling1BDConstraint (Pose const &, core::Size, SequenceProfileCOP profile) |
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| SequenceCoupling1BDConstraint (core::Size, SequenceProfileCOP profile) |
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virtual | ~SequenceCoupling1BDConstraint () |
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virtual ConstraintOP | clone () const |
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virtual std::string | type () const |
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virtual void | read_def (std::istream &, Pose const &, FuncFactory const &) |
| used by ConstraintIO and ConstraintFactory to construct this constraint from a input file stream (constraint file) More...
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virtual void | show (std::ostream &out) const |
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virtual void | score (XYZ_Func const &, EnergyMap const &, EnergyMap &) const |
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virtual void | fill_f1_f2 (AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const |
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| SequenceProfileConstraint () |
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| SequenceProfileConstraint (Pose const &, core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) |
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| SequenceProfileConstraint (core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) |
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virtual | ~SequenceProfileConstraint () |
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virtual void | show_def (std::ostream &, Pose const &) const |
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core::Size | seqpos () const |
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void | seqpos (core::Size seqpos) |
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void | set_sequence_profile (SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=NULL) |
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SequenceProfileCOP | sequence_profile () const |
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core::id::SequenceMappingCOP | profile_mapping () const |
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virtual core::Size | natoms () const |
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virtual AtomID const & | atom (core::Size const ) const |
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virtual utility::vector1
< core::Size > | residues () const |
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virtual ConstraintOP | remap_resid (SequenceMapping const &) const |
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virtual ConstraintOP | remapped_clone (pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const |
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void | weight (core::Real const w) |
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core::Real | weight () const |
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