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Rosetta Protocols
2014.35
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Rosetta Protocols
2014.35
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#include <FunGroupTK.hh>
Public Member Functions | |
| KinFunGroupTK (core::pose::Pose &p_in, utility::vector1< Size > pos=utility::vector1< Size >()) | |
| virtual void | place_c (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits_out) const |
| virtual void | place_h (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits) const |
| virtual void | place_d (KRSQuery const &q, core::conformation::Residue const &qrsd, utility::vector1< core::conformation::ResidueOP > &hits) const |
 Public Member Functions inherited from protocols::kinmatch::FunGroupTK | |
| virtual | ~FunGroupTK () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| FunGroupTK (core::pose::Pose &p_in, utility::vector1< Size > &pos) | |
| protocols::scoring::ImplicitFastClashCheck const & | ifc () const |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::kinmatch::FunGroupTK | |
| core::pose::PoseCOP | pose_ |
| utility::vector1< Size > const | pos_ |
| protocols::scoring::ImplicitFastClashCheckCOP | ifc_ |
| std::map< std::string, utility::vector1 < core::kinematics::Stub > > | stb_ |
| std::map< std::string, utility::vector1 < core::conformation::ResidueOP > > | rsd_ |
| core::chemical::ResidueTypeSetCAP | frs_ |
| protocols::kinmatch::KinFunGroupTK::KinFunGroupTK | ( | core::pose::Pose & | p_in, |
| utility::vector1< Size > | pos = utility::vector1<Size>() |
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virtual |
Implements protocols::kinmatch::FunGroupTK.
References protocols::kinmatch::KRSQuery::angth, protocols::kinmatch::KRSQuery::axs, protocols::kinmatch::KRSQuery::cen, numeric::xyzVector< class >::cross(), CYS_1oSIN_CB_SG_HG, CYS_CB_HG_DIS, CYS_CB_SG_PERP, CYS_HG_SG_PRJLEN, CYS_HG_SG_X_DROP, CYS_SG_CB_H, degrees(), numeric::xyzVector< class >::distance_squared(), protocols::kinmatch::KRSQuery::disth, protocols::kinmatch::FunGroupTK::ifc(), numeric::xyzVector< class >::length(), max(), min, numeric::xyzVector< class >::normalized(), protocols::kinmatch::KRSQuery::ori, pi, protocols::kinmatch::FunGroupTK::pos_, protocols::kinmatch::FunGroupTK::rsd_, core::conformation::Residue::seqpos(), protocols::kinmatch::sqr(), protocols::kinmatch::FunGroupTK::stb_, utility_exit_with_message, numeric::xyzVector< class >::x(), numeric::xyzVector< class >::y(), Y, and numeric::xyzVector< class >::z().
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virtual |
Implements protocols::kinmatch::FunGroupTK.
References protocols::kinmatch::KRSQuery::angth, protocols::kinmatch::KRSQuery::axs, protocols::kinmatch::KRSQuery::cen, numeric::xyzVector< class >::cross(), degrees(), numeric::xyzVector< class >::distance_squared(), protocols::kinmatch::KRSQuery::disth, HIS_1oSIN_CA_CB_CG, HIS_CB_HG_DIS, HIS_HE2_CG_PRJLEN, HIS_HE2_CG_X_DROP, protocols::kinmatch::FunGroupTK::ifc(), numeric::xyzVector< class >::length(), max(), min, numeric::xyzVector< class >::normalized(), protocols::kinmatch::KRSQuery::ori, pi, protocols::kinmatch::FunGroupTK::pos_, rotation_matrix(), protocols::kinmatch::FunGroupTK::rsd_, core::conformation::Residue::seqpos(), protocols::kinmatch::sqr(), protocols::kinmatch::FunGroupTK::stb_, utility_exit_with_message, numeric::xyzVector< class >::x(), Y, numeric::xyzVector< class >::y(), and numeric::xyzVector< class >::z().
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virtual |
Implements protocols::kinmatch::FunGroupTK.
References protocols::kinmatch::KRSQuery::angth, protocols::kinmatch::KRSQuery::axs, protocols::kinmatch::KRSQuery::cen, numeric::xyzVector< class >::cross(), degrees(), numeric::xyzVector< class >::distance_squared(), protocols::kinmatch::KRSQuery::disth, HIS_1oSIN_CA_CB_CG, HIS_CB_HG_DIS, HIS_HE2_CG_PRJLEN, HIS_HE2_CG_X_DROP, protocols::kinmatch::FunGroupTK::ifc(), numeric::xyzVector< class >::length(), max(), min, numeric::xyzVector< class >::normalized(), protocols::kinmatch::KRSQuery::ori, pi, protocols::kinmatch::FunGroupTK::pos_, rotation_matrix(), protocols::kinmatch::FunGroupTK::rsd_, core::conformation::Residue::seqpos(), protocols::kinmatch::sqr(), protocols::kinmatch::FunGroupTK::stb_, utility_exit_with_message, numeric::xyzVector< class >::x(), Y, numeric::xyzVector< class >::y(), and numeric::xyzVector< class >::z().
1.8.7