protocols::enzdes::EnzdesJobInputter Class Reference

#include <EnzdesJobInputter.hh>

Public Member Functions
	EnzdesJobInputter ()
virtual	~EnzdesJobInputter ()
virtual void	pose_from_job (core::pose::Pose &pose, protocols::jd2::JobOP job)
	this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb More...
Public Member Functions inherited from protocols::jd2::PDBJobInputter
	PDBJobInputter ()
virtual	~PDBJobInputter ()
virtual void	fill_jobs (Jobs &jobs)
	this function determines what jobs exist from -s/-l More...
virtual JobInputterInputSource::Enum	input_source () const
	Return the type of input source that the PDBJobInputter is currently using. More...
Public Member Functions inherited from protocols::jd2::JobInputter
virtual	~JobInputter ()

Private Attributes
protocols::toolbox::match_enzdes_util::EnzdesLoopsFileOP	enz_loops_file_

Additional Inherited Members
Static Public Member Functions inherited from protocols::jd2::JobInputter
static std::string	job_inputter_input_source_to_string (JobInputterInputSource::Enum source)
	call this with input_source() to get the input source of a particular job inputter More...
Protected Member Functions inherited from protocols::jd2::JobInputter
void	load_pose_into_job (core::pose::Pose const &pose, JobOP job)
	this function modifies the InnerJob's pose. Access to that pose is via friendship. More...
void	load_pose_into_job (core::pose::PoseCOP pose, JobOP job)
	this function modifies the InnerJob's pose. Access to that pose is via friendship. More...
virtual core::Size	get_nstruct () const
	this code is here to restrict the use of inner_job_nonconst (this class is a friend class and can do it) More...

Constructor & Destructor Documentation

protocols::enzdes::EnzdesJobInputter::EnzdesJobInputter

(

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References basic::options::OptionKeys::enzdes::enz_loops_file, enz_loops_file_, basic::options::option, protocols::enzdes::TR, user, and utility_exit_with_message.

protocols::enzdes::EnzdesJobInputter::~EnzdesJobInputter ( )

virtual

Member Function Documentation

void protocols::enzdes::EnzdesJobInputter::pose_from_job ( core::pose::Pose &  pose, protocols::jd2::JobOP  job  )

virtual

this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb

Reimplemented from protocols::jd2::PDBJobInputter.

References enz_loops_file_, protocols::toolbox::match_enzdes_util::get_enzdes_observer(), protocols::jd2::Job::input_tag(), protocols::jd2::JobInputter::load_pose_into_job(), core::pose::Pose::observer_cache(), protocols::enzdes::enzutil::read_pose_from_pdb(), core::pose::datacache::ObserverCache::set(), core::pose::datacache::CacheableObserverType::SPECIAL_SEGMENTS_OBSERVER, and protocols::enzdes::TR.

Member Data Documentation

protocols::toolbox::match_enzdes_util::EnzdesLoopsFileOP protocols::enzdes::EnzdesJobInputter::enz_loops_file_

private

Referenced by EnzdesJobInputter(), and pose_from_job().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzdesJobInputter.hh
• src/protocols/enzdes/EnzdesJobInputter.cc