protocols::rotamer_recovery::RRProtocol Class Reference

The protocol to run to compute the rotamer recovery the rotamer recovery test. More...

#include <RRProtocol.hh>

Public Member Functions
virtual	~RRProtocol ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
virtual std::string	get_name () const =0
virtual std::string	get_parameters () const =0
virtual void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task)=0

Protected Member Functions
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Detailed Description

The protocol to run to compute the rotamer recovery the rotamer recovery test.

Besides implementing the interface given in the base class RRProtocol each RRProtocol should have an entry in the convenience RotamerRecovery constructor so its use can be indicated by name.

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRProtocol::~RRProtocol ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Member Function Documentation

virtual std::string protocols::rotamer_recovery::RRProtocol::get_name ( ) const

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolMover, protocols::rotamer_recovery::RRProtocolReferenceStructure, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolMinPack, protocols::rotamer_recovery::RRProtocolPackRotamers, protocols::rotamer_recovery::RRProtocolRelax, and protocols::rotamer_recovery::RRProtocolRTMin.

virtual std::string protocols::rotamer_recovery::RRProtocol::get_parameters ( ) const

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolMover, protocols::rotamer_recovery::RRProtocolReferenceStructure, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolRTMin, protocols::rotamer_recovery::RRProtocolMinPack, protocols::rotamer_recovery::RRProtocolPackRotamers, and protocols::rotamer_recovery::RRProtocolRelax.

bool protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2  )

protected

References score.

Referenced by protocols::rotamer_recovery::RRProtocolMinPack::run(), protocols::rotamer_recovery::RRProtocolPackRotamers::run(), protocols::rotamer_recovery::RRProtocolRotamerTrials::run(), protocols::rotamer_recovery::RRProtocolMover::run(), protocols::rotamer_recovery::RRProtocolReferenceStructure::run(), protocols::rotamer_recovery::RRProtocolRelax::run(), and protocols::rotamer_recovery::RRProtocolRTMin::run().

virtual void protocols::rotamer_recovery::RRProtocol::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  score_function, core::pack::task::PackerTask const &  packer_task  )

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolRTMin, protocols::rotamer_recovery::RRProtocolRelax, protocols::rotamer_recovery::RRProtocolReferenceStructure, protocols::rotamer_recovery::RRProtocolMover, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolMinPack, and protocols::rotamer_recovery::RRProtocolPackRotamers.

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocol.hh
• src/protocols/rotamer_recovery/RRProtocol.cc